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AlexanderLabWHOI
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EUKulele
Automatic eukaryotic taxonomic classification
MIT License
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Run against Eukrprot database did not complete successfully and Eukprot update request
#66
mkarlik93
opened
2 months ago
1
Improve DB download option
#65
paulzierep
opened
3 months ago
2
Suppress opening of matplotlib figure opening
#64
paulzierep
opened
3 months ago
1
Mamba install for eukulele=2.0.7 is problematic
#63
g0ddengr
closed
4 weeks ago
5
buscu 5.6.1
#62
saky7009
closed
4 weeks ago
1
Combining multiple samples
#61
susheelbhanu
opened
7 months ago
2
EUKulele v2.0.7 fails taxonomy estimation step
#60
danilodileo
closed
4 weeks ago
1
No samples found in sample directory with specified peptide extension.
#59
shibormi
closed
4 weeks ago
6
some runs fail when downloading gtdb and marmmetsp
#58
danilodileo
opened
9 months ago
5
Print db version
#57
danilodileo
opened
11 months ago
1
Diamond did not complete successfully with rc code 1 Alignment did not complete successfully
#56
shanexuuu
closed
11 months ago
1
Visualisation error
#55
susheelbhanu
opened
11 months ago
6
Documentation update
#54
susheelbhanu
closed
10 months ago
2
Using multiple databases in the same run
#53
susheelbhanu
opened
1 year ago
2
Cant install from Mamba
#52
blsteven
closed
4 weeks ago
5
Taxonomy estimation step fails with eukprot
#51
cnatalie
opened
1 year ago
3
diamond --threads
#50
alephreish
closed
4 weeks ago
4
Busco issue
#49
qfaber
opened
1 year ago
8
Setting customized evalue for filter_metric
#48
lsjmouse
closed
1 year ago
1
Fail to install with Conda
#47
ZongzhiWu
opened
2 years ago
6
EUKulele not recognizing downloaded db?
#46
nvpatin
closed
2 years ago
15
Update documentation with default nucleotide extension
#45
cnatalie
closed
2 years ago
1
EUKulele is making a Diamond database even though it already exists
#44
jolespin
opened
2 years ago
5
How can I run with existing database?
#43
jolespin
closed
2 years ago
1
Providing added functionality to the LCA method & removing BUSCO dependency
#42
akrinos
closed
2 years ago
0
EUKulele Fails on "Performing taxonomic visualization steps..."
#41
tuck82er
opened
2 years ago
7
Visualization Error
#40
MichielPerneel
closed
4 weeks ago
2
Uninformative error when given empty fasta file
#39
jlw-ecoevo
closed
1 year ago
3
Can you give EUKulele a custom diamond database? (e.g. RefSeq nr)
#38
jolespin
closed
1 year ago
4
Issues running EUKulele with .fnn file
#37
sgleich
closed
2 years ago
1
Missing taxonomy_counts/test_all_division_counts.csv
#36
michoug
opened
3 years ago
7
Fasta output for those classified as euks
#35
susheelbhanu
opened
3 years ago
0
Conda installation issue
#34
susheelbhanu
closed
3 years ago
5
Question: Threads and estimated runtime
#33
susheelbhanu
closed
3 years ago
3
Add Marzoanmmetsp database to next release
#32
halexand
closed
2 years ago
0
EUKulele setup database
#31
slaperriere
opened
3 years ago
4
Question: metagenomes or MAGs?
#30
Ahmed-Shibl
closed
1 year ago
1
Minor formatting fixes.
#29
arfon
closed
3 years ago
0
log database info within folder where run
#28
halexand
opened
3 years ago
1
Clean up miscelaneous files that are written out
#27
halexand
opened
3 years ago
0
fixed small typos
#26
johanneswerner
closed
3 years ago
0
fix installation commands in quickstart
#25
will-rowe
closed
3 years ago
0
Conda installation fails
#24
johanneswerner
closed
3 years ago
8
Question on use with MAGs
#23
AstrobioMike
closed
3 years ago
2
Joss branch
#22
akrinos
closed
3 years ago
0
Increasing time of travis build again and modifying paper
#21
akrinos
closed
3 years ago
0
Switching up Travis requirements; updating docs
#20
akrinos
closed
3 years ago
0
Adding about page and spillover paper content to the readthedocs
#19
akrinos
closed
3 years ago
0
Merging in more readthedocs changes
#18
akrinos
closed
3 years ago
0
Merging in small changes to documentation to test RTD
#17
akrinos
closed
3 years ago
0
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