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I messaged Elies regarding the status of our samples. It turns out, according to Elies, uBiome processed the samples on 2017-10-11! She wrote:
> Let me know if you can access the data from the Expl…
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[uBiome](https://ubiome.com/) — the 23andme of metagenomics / the microbiome — has graciously agreed to sponsor the 16S ribosomal RNA sequencing of our initial 5 fratjuice samples.
This issue will …
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We now have sequencing data from uBiome as both raw [FASTQ sequences](https://github.com/dhimmel/fratjuice/tree/9700b638147574580200d9f1cf388b559ad5269f/samples/ubiome/fastq) and taxonomy-level [abund…
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Fecha: miércoles 4 abril 2018
Lugar: ubiome
Tema: VueJS a gran escala
Expositores: @raulghm @rcanepa @katguzmann
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It seems that all three currently shared datasets each have their own, individual formats and directory structures (welcome to bioinformatics!). Do these different formats/layouts represent changes in…
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Currently, we have [five samples](https://github.com/dhimmel/fratjuice/blob/2bf8530921bb3921700cfc8e61b15e88bd85de64/samples/samples.tsv). Each sample is in either a 15 or 50 mL conical-bottom tube. S…
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I just took a quick look at your fastq files in the `fastq-spragueuBiomeJan2015` folder. A couple things jump out at me...
1. Do you know which body sites these are for? Does each lane's worth of dat…
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Hi,
In my application I have two traits where only a subset of the samples have observation on both traits. I want to use the kernel matrix for the samples to estimate the trait covariance components…
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We recently froze some of the samples in preparation for 16S fratseq: see https://github.com/dhimmel/fratjuice/issues/2#issuecomment-310534044. However, we still have some refrigerated samples that we…