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Dear Scimap Team,
Thank you for your exceptional work in advancing spatial-omics biology. I am currently facing a challenge with integrating two different scales of CODEX quantification data proc…
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Typically three types of output:
- Per-Spot Prediction Scores (SpatialDM/LIANA+/NICHES)
- Per slide - i.e. one summary of interactions for the whole slide/sample (COMMOT/MISTy/LIANA+)
- Per Source-Tar…
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### Quick summary
The Filter by Price block fields do not show the whole min/max price.
![Annotation on 2024-08-23 at 12-08-16](https://github.com/user-attachments/assets/4e0a6b72-0fea-49a6-a7a2…
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Hi Mart,
I hope all is well. I am trying to perform whole-slide inference on a WSI. I want to use the Patch iterator class so that I can extract adjacent patches in an ordered fashion. I also want …
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Hello,
I am seeking clarification on how the labels for patches are assigned in the project. I apologize if I have overlooked any relevant information regarding this.
Is it correct to assume tha…
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# GeoPandas for Geospatial Data Analysis
## Course Description
This course is designed to provide a comprehensive introduction to GeoPandas, a powerful Python library for working with geospatial d…
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Hi, thanks for creating this tool!
I have a few questions about how to create the input files and what the output represents:
1. I understand I should convert TCGA .svs files to .tif using this sc…
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Dear Mart,
In the README, the data/example.ipynb in HookNet-TLS Annotations: https://zenodo.org/records/10614928 only converts XML to PNG, which may not be the Tissue-Background Segmentation Algori…
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i am using this issue to provide info on the data i use when benchmarking wsinfer in qupath.
image: TCGA-3C-AALI-01Z-00-DX1.F6E9A5DF-D8FB-45CF-B4BD-C6B76294C291.svs ([link to image for download](ht…