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labsyspharm
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scimap
Spatial Single-Cell Analysis Toolkit
https://scimap.xyz/
MIT License
67
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Fixed str dtype for Unknown cells, Closes #107
#109
emmanuel-contreras
closed
6 days ago
1
overlapping legend on sm.pl.heatmap when constrained_layout set to True, and default arguments
#108
emmanuel-contreras
opened
1 week ago
4
TypeError: Feature names are only supported if all input features have string names, but your input has ['str', 'str_'] when running sm.tl.spatial_cluster
#107
emmanuel-contreras
closed
6 days ago
1
sm.pp.rescale and sm.tl.phenotype for phenotyping not adhering to user-dfined gates
#106
LukasHats
closed
3 weeks ago
6
Gating QC plots no longer implemented in scimap.pp.rescale()
#105
CameronFRWatson
opened
1 month ago
0
Minor edits to paper
#104
csoneson
closed
1 month ago
0
Update classify.py
#103
sarafiller
closed
2 months ago
1
spatial_lda reproducibility
#102
batukav
opened
2 months ago
0
Package test coverage
#101
jluethi
closed
1 month ago
7
How do I run the tests?
#100
kevinyamauchi
closed
3 months ago
4
"command not found: pipx" when setting up development environment
#99
kevinyamauchi
closed
2 months ago
2
.vscode in the repo
#98
kevinyamauchi
closed
3 months ago
2
upgrade the latest version
#97
yas92
closed
3 months ago
3
Bug in PIP INSTALL SCIMAP
#96
virlyananda
closed
3 months ago
21
Fixed _classify.py bugs
#95
sarafiller
closed
4 months ago
0
Bump black from 19.10b0 to 24.3.0
#94
dependabot[bot]
closed
4 months ago
0
Napari doesnt open and code crashes.
#93
andreevg04
closed
3 months ago
5
np.warnings.filterwarnings('ignore') no longer supported by numpy
#92
milesbailey121
closed
5 months ago
3
Numpy ArrayMemoryError
#91
lukezhang-811
closed
3 months ago
1
Bump aiohttp from 3.9.0 to 3.9.2
#90
dependabot[bot]
closed
4 months ago
0
Bump aiohttp from 3.8.6 to 3.9.0
#89
dependabot[bot]
closed
5 months ago
0
Interpretibility of adata.uns['spatial_interaction']
#88
Dillon214
opened
5 months ago
1
Bump pillow from 10.1.0 to 10.2.0
#87
dependabot[bot]
closed
5 months ago
0
Bump jinja2 from 3.1.2 to 3.1.3
#86
dependabot[bot]
closed
5 months ago
0
batch samples analysis
#85
yas92
opened
7 months ago
3
Apply MIT license
#84
jmuhlich
closed
7 months ago
0
adata.raw.X vs. adata.X
#83
josenimo
closed
3 months ago
1
%gui qt not running (M2)
#82
virlyananda
closed
3 months ago
2
Added functionality to sm.hl.classify()
#81
sarafiller
closed
8 months ago
0
Added functionality to classify helper function
#80
sarafiller
closed
8 months ago
0
Napari automatically downsamples image when using sm.pl.gate_finder()
#79
MargotCh
opened
9 months ago
3
Bump urllib3 from 1.26.15 to 1.26.18
#78
dependabot[bot]
closed
7 months ago
1
Bump urllib3 from 1.26.15 to 1.26.17
#77
dependabot[bot]
closed
9 months ago
1
Installation problem on Mac
#76
anaskach
closed
10 months ago
0
How can I get the test p value of two groups when comparing the distances between two cell types
#75
sailseem
opened
10 months ago
1
Wrong figure in the "Getting Started with Scimap" tutorial
#74
ziyuanzhao2000
closed
3 months ago
1
not maching gating area with the image
#73
Elena983
opened
10 months ago
1
Can I gate .qptiff image?
#72
xyin0918
opened
10 months ago
1
spatial_lda and recurrent cellular neighborhoods
#71
batukav
opened
10 months ago
4
how to export the particular data file about the distance calculation
#70
sailseem
opened
11 months ago
1
mcmicro_to_scimap add a condition to error out if multiple dim CSV files are provided
#69
pantsm
opened
11 months ago
0
Bump certifi from 2022.12.7 to 2023.7.22
#68
dependabot[bot]
closed
5 months ago
1
Bump aiohttp from 3.8.4 to 3.8.5
#67
dependabot[bot]
closed
5 months ago
1
Add spatial obsm to adata on MCMICRO loading
#66
adamjtaylor
opened
1 year ago
0
attempt to fix failed checks
#65
amorje
opened
1 year ago
0
scimap installation got error
#64
bugie19
opened
1 year ago
11
spatial aggregate CLI
#63
amorje
closed
1 year ago
0
added help messages
#62
amorje
closed
1 year ago
0
adding CLI compatibility to foldchange.py
#61
amorje
closed
1 year ago
0
doc changes correction
#60
amorje
closed
1 year ago
0
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