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### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue for this…
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### Description of bug
Myself and the nf-core/taxprofiler team were testing ganon 2.0 with the newly merged ganon MultiQC module as in MultiQC v1.24.1.
Despite the new log file being relatively si…
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Hi there,
I'm testing `xenome classify` on an aws instance (latest Ubuntu) and it hangs after about 50 minutes. The command I used for launching the process is
```
xenome classify -T 8 -M 28 -P /da…
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### Description of bug
Hi there.
I found two bugs.
1. When running MultiQC `v1.22.*`, the software file pattern `*_mqc_versions.(yml|yaml)` is not being recognised or the file is ignored by som…
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Thank you for developing xenomake. When I analyzed the test dataset provided. The code stopped at the step of xengsort. The error is because of a missing file, i.e. unclassified.fq.gz. Does anyone …
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### Description of bug
The documentation pages shows that hostile is supported. But the CLI tool seems to know nothing of it.
Here is the conda env I used to install.
```
name: multiqc
chan…
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### Description of bug
In version 1.18 of MultiQC CollectWgsMetrics from Picard is picked up, but in the two latest versions I've checked 1.22.1 and 1.22.2 it's not detected. Neither from the Sentieo…
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### Description of bug
I am using multiqc to make reports on `samtools stats` and `samtools coverage` logs. MultiQC recognized samtools stats output, but not samtools coverage output.
I tried to …
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I'm trying to install nextflow but when I execute the comand "nextflow run main_AMR++.nf -profile conda" , this happens:
ERROR ~ Error executing process > 'FAST_AMRplusplus:FASTQ_QC_WF:multiqc (Ru…
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### Description of bug
This error occurs with the newest dev version ([8851655](https://github.com/MultiQC/MultiQC/commit/88516550ad52c07b5c9f12543c409fd54151f254) and before), potentially related …