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nf-core
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modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
https://nf-co.re/modules
MIT License
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fix: quartonotebook imported over multiple lines which broke detect-nf-test-changes
#7063
adamrtalbot
opened
2 minutes ago
0
Initial addition. Works.
#7062
ramirobarrantes
opened
17 minutes ago
0
`SHAPEIT5_PHASECOMMON` Migrate to nf-test
#7061
LouisLeNezet
opened
24 minutes ago
0
`SHAPEIT5_LIGATE` Migration to nf-test
#7060
LouisLeNezet
opened
1 hour ago
0
Add sam2lca/updadb module
#7059
maxibor
opened
2 hours ago
0
Change Samtools/view to use same container as all other samtools modules
#7058
tkchafin
opened
3 hours ago
0
new module: CTAT/SPLICING
#7057
matthdsm
opened
3 hours ago
1
Fix CI modules lint
#7056
mirpedrol
opened
6 hours ago
1
use prefix for pilon ouput
#7055
nschan
closed
5 hours ago
0
Update nonpareil/curve: png is optional
#7054
LilyAnderssonLee
closed
8 hours ago
0
Add Test Report
#7053
edmundmiller
opened
14 hours ago
0
Add module gzrt (#6918)
#7052
mazzalab
opened
18 hours ago
0
Added subworkflow fasta_gxf_busco_plot
#7051
GallVp
opened
19 hours ago
2
bump regtools version
#7050
abartlett004
opened
22 hours ago
0
Bcftools convert migration to nf-test
#7049
LouisLeNezet
opened
1 day ago
0
Fix tcoffee alncompare
#7048
luisas
opened
1 day ago
0
remove test directories from module_names output
#7047
mashehu
closed
1 day ago
0
[FEATURE] move nf-test tests from gatk4/asereadcounter in a tests folder
#7046
maxulysse
opened
1 day ago
0
Remove `params.hisat2_build_memory` from `hisat2/build`
#7045
maxulysse
opened
1 day ago
0
update Trinity version
#7044
avani-bhojwani
opened
1 day ago
2
ci: Fix linting getting skipped
#7043
edmundmiller
closed
1 day ago
1
Remove Wave Dockerfile Singularity builds
#7042
edmundmiller
closed
1 day ago
0
Include sizes in samtools faidx
#7041
maxulysse
opened
2 days ago
0
Add SKA/FASTA module
#7040
itrujnara
closed
1 day ago
0
Purge CI workspace before running using GPU
#7039
adamrtalbot
closed
2 days ago
0
Update bowtie2 align test
#7038
sateeshperi
opened
2 days ago
0
Purge the workspace for the self-hosted runners
#7037
adamrtalbot
closed
2 days ago
1
fix special characters in samtools/view container
#7036
tkchafin
closed
2 days ago
1
bismark/align - use more descriptive variable names than it in test
#7035
sateeshperi
opened
2 days ago
0
Update bclconvert
#7034
sateeshperi
opened
2 days ago
0
New module: regtools junction extract
#7033
abartlett004
closed
1 day ago
7
new module:regtools
#7032
abartlett004
closed
1 day ago
0
Cellbender empty droplet removal
#7031
chaochaowong
opened
2 days ago
0
PoC: Use Fusion for test workdir
#7030
edmundmiller
opened
2 days ago
0
build: Add nf-co2footprint to CI runs
#7029
edmundmiller
opened
2 days ago
0
ci: Disable conda for the moment
#7028
edmundmiller
closed
2 days ago
2
Fix Renovate CI versions
#7027
edmundmiller
closed
2 days ago
0
Fix language server errors
#7026
matthdsm
closed
1 day ago
5
Add pre filter and shard counting step
#7025
mashehu
opened
3 days ago
4
Add gpu tag filter
#7024
mashehu
closed
2 days ago
0
Update KrakenUniq: Add SE/PE to suffixes as cannot control by typical ext.prefix
#7023
jfy133
closed
1 day ago
4
migrate vcf2db to wave
#7022
matthdsm
closed
3 days ago
1
ci: Only run GPU tags and rely on "changed-since"
#7021
edmundmiller
closed
3 days ago
1
chore(deps): update github actions
#7020
renovate[bot]
closed
1 day ago
1
Bump Nextflow Versions
#7019
edmundmiller
closed
3 days ago
0
Address limitations of using nf-test sharding
#7018
edmundmiller
opened
3 days ago
1
Create conda-fail.yml on Conda CI failures
#7017
edmundmiller
opened
3 days ago
0
Handle GitHub runners possibly running out of space
#7016
edmundmiller
opened
3 days ago
2
update module: Dragonflye to v1.2.1
#7015
Daniel-VM
opened
4 days ago
0
change stageInMode to copy and update module
#7014
famosab
opened
4 days ago
0
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