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nf-core
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modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
https://nf-co.re/modules
MIT License
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New module: nanoq
#5896
LilyAnderssonLee
opened
23 hours ago
0
new module: VCF2Genome
#5895
scarlhoff
closed
20 hours ago
1
bump somalier/extract and somalier/relate version
#5894
fellen31
opened
1 day ago
2
chore(deps): update pre-commit hook astral-sh/ruff-pre-commit to v0.5.0
#5893
renovate[bot]
opened
1 day ago
0
Add GMM-Demux
#5892
mari-ga
opened
1 day ago
0
Add Gmm-Demux
#5891
mari-ga
closed
1 day ago
1
Add: Gmm-Demux
#5890
mari-ga
closed
1 day ago
1
Bump phantompeakqualtools 1.2.2
#5889
JoseEspinosa
closed
1 day ago
2
Fix `liftoff` `conda` environment
#5888
GallVp
opened
2 days ago
0
samtools/reheader: Fix bug causing output name to be incorrectly evaluated
#5887
tkchafin
closed
2 days ago
0
new module: yte
#5886
famosab
opened
2 days ago
0
Pass annotation files to last-dotplot
#5885
charles-plessy
closed
1 day ago
2
bump MultiQC version
#5884
matthdsm
closed
3 days ago
0
new module: datavzrd
#5883
famosab
closed
2 days ago
1
new module: datavzrd
#5882
famosab
closed
3 days ago
1
Bump shinyngs modules
#5881
pinin4fjords
closed
3 days ago
1
update peddy tests
#5880
ramprasadn
closed
4 days ago
0
Added prefix to gunzip and while keeping the default name as `archive.toString() - '.gz'`
#5879
GallVp
closed
2 days ago
0
chore(deps): update pre-commit hook python-jsonschema/check-jsonschema to v0.28.6
#5878
renovate[bot]
closed
4 days ago
0
`ariba/getref` port to nf-test, add meta to tuple and stub
#5877
famosab
closed
2 days ago
2
New sections for further module info
#5876
famosab
opened
4 days ago
0
produce stub files
#5875
famosab
closed
4 days ago
0
mapAD: fix `versions.yml` emission
#5874
jch-13
closed
4 days ago
0
[FEATURE] Stranger name collision warning
#5873
fellen31
opened
5 days ago
0
add stub and stub test to chromap, change test names
#5872
famosab
closed
4 days ago
2
new module: agat/spaddintrons
#5871
GallVp
opened
5 days ago
0
Update main.nf
#5870
RaqManzano
closed
3 days ago
2
Update CONCOCT module(s): conda build bump, stub, and nf-test
#5869
jfy133
closed
3 days ago
3
Concoct/concoctcoveragetable modules updates
#5868
jfy133
closed
1 week ago
0
POC of new meta.yml structure and ontologies
#5867
mirpedrol
opened
1 week ago
0
deeptmhmm nf-test, container version bump
#5866
vagkaratzas
closed
1 week ago
0
new module: DRSTest/DRSTest01
#5865
ShahNiraj
opened
1 week ago
0
Bump concoct/cutupfasta version, add stub, add nf-test
#5864
jfy133
closed
1 week ago
0
--soloCBwhitelist option not working
#5863
ulyssebaruchel
opened
1 week ago
0
New modules metabuli: Add- Build- Classify
#5862
Joon-Klaps
opened
1 week ago
0
stubs and test for rnaseq modules - part II
#5861
maxulysse
opened
1 week ago
4
new subworkflow: gff3_gt_gff3_gff3validator_stat
#5860
GallVp
opened
1 week ago
0
new module: agat/spextractsequences
#5859
GallVp
opened
1 week ago
0
Added stub logic and test to fastq_fastqc_umitools_fastp
#5858
GallVp
closed
1 week ago
0
chore(deps): update pre-commit hook astral-sh/ruff-pre-commit to v0.4.10
#5857
renovate[bot]
closed
1 week ago
0
Sentieon license server - testing
#5856
maxulysse
opened
1 week ago
0
antismashlite: Update pattern of output path
#5855
jasmezz
closed
1 week ago
0
stubs and test for rnaseq modules - part I
#5854
maxulysse
closed
1 week ago
3
Update input params for bwameme
#5853
ramprasadn
closed
1 week ago
0
update to samtools 1.20
#5852
maxulysse
closed
1 week ago
1
Fix custom/catadditionalfasta
#5851
maxulysse
closed
1 week ago
0
Adding input value-channel for controlling spring-decompress cmd and output
#5850
asp8200
closed
5 days ago
8
Update Abricate to include (missing) additional optional input channel and add stub
#5849
jfy133
closed
1 week ago
0
Swap test file paths to use `testdata_base_path`
#5848
SPPearce
opened
1 week ago
0
Conda remove defaults channel - structural changes
#5847
ewels
opened
1 week ago
0
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