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While running sarek with option --trim_fastq i encounter a following error:
` ERROR: Running in parallel is not supported on Python 2 `
The issue could be with singularity, could you suggest a…
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Using the "old" 2.3 release version of Sarek on a 48-core node with +700G memory, the preprocessing of a 45x/45x tumour/normal WGS pair took 2d 1h 11m 24s - that is actually pretty good. OTOH, there …
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Hey,
looks like grenepipe would be super useful for us. Unfortunately, it seems to always get stuck in one of the final steps, namely in this command:
java -Xms32m -Xmx1200M -classpath /lv01/home/ha…
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**Description of bug:**
When running MultiQC v1.10.1 with files produced by VEP 104, the vep html report is not found and not part of the MultiQC report.
**MultiQC Error log:**
```
[INFO ]…
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We need modules in [nf-core/modules](https://github.com/nf-core/modules) for:
Please tick a module if you are working on one, and add the link to the PR once you created it
- [ ] allelecounter
…
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## Bug report
Running the nf-core/sarek pipeline from a node with 128 Cores and 256 Threads, 1TB ram using Singularity and SGE.
Similar to https://github.com/nextflow-io/nextflow/issues/1871 and …
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### Description of bug
I recently switched my QC pipeline from outputting SUMMARY reports (which worked as expected) to VERBOSE reports, and now MultiQC isn't reporting on the files. My files are n…
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Hello,
## Check Documentation
I have checked the following places for your error:
- [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [x] [nf-core/eager pipeli…
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Hello IUC,
**Tl;DR:**
Help us fix tool tests!
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we would like to make sure that our tools are well tested and working in the widest range of deployment scenarios possible…
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**Description of bug:**
Hi Phil,
I am trying to run multiqc from a qualimap output and I get the following error that I can't understand. Please note that the outputs `flagstat_report_data` and `fla…