nextflow-io nextflow issues

nextflow-io / nextflow

A DSL for data-driven computational pipelines

http://nextflow.io

Apache License 2.0

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issues

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Dynamic path for publish section

#5090 Puumanamana opened 17 hours ago
0
Enable multiple git revisions (Jun 2024) : final, using commit ID in repo localPath

#5089 marcodelapierre opened 23 hours ago
4
Mixing of function scope to two separate calls to same Groovy function from separate workflows

#5088 bskubi opened 1 day ago
2
Enable multiple git revisions (Jan-Apr 2024) : temporary, using revision name in repo localPath

#5087 marcodelapierre opened 2 days ago
1
The number of completed tasks from the final report does not match the number of actually started tasks in case of an error

#5086 cgoina opened 4 days ago
0
Failed to publish: large file transfer to GCS

#5085 nick-youngblut opened 5 days ago
1
Plugin did not take subcommand options

#5084 sfc-gh-hyu opened 5 days ago
0
Fixed the issue to produce detailed error output.

#5083 deekshithpranav opened 5 days ago
1
Issue-5073-errMsg-Fix

#5082 deekshithpranav closed 5 days ago
1
Azure Fusion integration should not fail when managed identity auth is present

#5081 swampie opened 5 days ago
1
Bump Fusion 2.4

#5080 pditommaso closed 5 days ago
1
[Snyk] Security upgrade urllib3 from 2.0.7 to 2.2.2

#5079 arnaualcazar closed 6 days ago
2
Error in nxf_kill

#5078 olivierlabayle opened 6 days ago
0
New introspection `workflow.seqeraPlatform` scope for data from Seqera Platform

#5077 ewels opened 6 days ago
4
[Nextflow + Azure Batch] Unable to find size for VM name 'Standard_E4ads_v5' and location 'germanywestcentral'

#5076 landroutsosAIE opened 1 week ago
0
[Snyk] Security upgrade urllib3 from 2.0.7 to 2.2.2

#5075 arnaualcazar closed 1 week ago
1
Nextflow creates object ending with slash during when using publishDir

#5074 adriannavarrobetrian opened 1 week ago
3
"Missing project main script" error when there is a directory with the workflow name

#5073 lazappi opened 1 week ago
3
Move Wave docs to Wave documentation

#5072 jason-seqera opened 1 week ago
5
4446 ignore then fail strategy v3

#5071 pditommaso closed 1 week ago
5
Fix executions hangs on finalisation exception

#5070 pditommaso closed 1 week ago
1
Fix support for s5cmd 2.2.2

#5069 pditommaso closed 1 week ago
1
Fix for issue #4757

#5068 tzuni closed 1 week ago
2
[Azure Batch]: TimeoutException when Nextflow attempts to read files following task completion for large-scale analyses in Azure

#5067 apetkau opened 1 week ago
6
Implement ignoreThenFail as pseudo error strategy

#5066 pditommaso closed 1 week ago
1
Do not require tentantId when using Azure system-assigned managed identity

#5065 adamrtalbot closed 1 week ago
4
Better tests for Azure Managed Identity

#5064 adamrtalbot opened 1 week ago
0
Re-implement some changes that were dropped when #5042 was merged

#5063 adamrtalbot closed 1 week ago
4
Add Managed Identity to Azure authentication documentation

#5062 adamrtalbot closed 1 week ago
3
Fix the cleanup of local secret file

#5061 pditommaso closed 1 week ago
8
Improve documentation for Azure Manage identities

#5060 pditommaso closed 1 week ago
0
variable task.gpus like task.cpus.

#5059 alessiovignoli opened 1 week ago
1
Generate stubs from process outputs

#5058 bentsherman opened 2 weeks ago
0
Fix security vulnerabilities

#5057 bentsherman closed 2 weeks ago
0
Remove GA4GH plugin

#5056 pditommaso closed 2 weeks ago
7
timelime -> timeline

#5055 lindenb closed 2 weeks ago
1
Surface AWS Batch time errors

#5054 ewels opened 2 weeks ago
1
Fix unique operator hangs when applied to value

#5053 pditommaso closed 2 weeks ago
1
Using the the unique operator after collect causes the pipeline to stall at pipeline end

#5052 R-Cardenas closed 2 weeks ago
1
Add note that beforeScript runs inside the container for some execution environments

#5051 ewels closed 2 weeks ago
1
Docs on running a subprocess in completion handler

#5050 nick-youngblut opened 2 weeks ago
0
Docs sidebar: Black text for version changer.

#5049 ewels closed 3 weeks ago
3
Google Batch Error : Process terminated for an unknown reason -- Likely it has been terminated by the external system

#5048 VasLem opened 3 weeks ago
0
Store all .command* log files in log folder

#5047 trvietdung opened 3 weeks ago
0
Can't modify metadata using values from `each`

#5046 olgabot closed 2 weeks ago
2
Target java17

#5045 pditommaso closed 2 weeks ago
5
Allow dynamic `cache` directives using closures

#5044 greenberga opened 3 weeks ago
4
`join` with `remainder:true` emits even when the upstream process fails. Is this an expected behaviour?

#5043 GallVp closed 3 weeks ago
2
task: update azure batch to 1.0.0-beta version

#5042 swampie closed 2 weeks ago
5
null value in publishDir causes Nextflow to hang without error

#5041 amrei-bp closed 1 week ago
1