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### Description
Currently, HistoQC is using OpenSlide as WSI reader to manipulate whole-slide images. Unfortunately, OpenSlide is not really maintained anymore. It makes HistoQC only supports older f…
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Unfortunately, the recognition of the numbering of channels, tiles and z-levels in the file names fails as soon as a space appears in the name. I would also like to avoid spaces, but the files are not…
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I'm running Ubuntu 16.04 and installed those packages with apt : zlib-devel libcurl-devel libxml2-devel ncurses-devel gsl-devel check-devel scons
Then I did :
``` bash
git clone https://github.com/o…
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I am often getting "IOException: block[ 0 ] already removed " errors for zvi files, here is a example file that causes it https://drive.google.com/file/d/1U-d2MApVq3GROoEyWTPSA_Uz03AVA2lU/view?usp=sh…
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Hi all
` ERROR: Command errored out with exit status 1:
command: 'c:\users\jaydoc\appdata\local\programs\python\python37\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"…
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Getting attribute values of a WellSample object is very inefficient. This becomes a major bottleneck when working with a large number of images, for example in case of a 384 well plate.
Here is small…
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Hi,
In order to install hpg-aligner, I have followed the instructions of wiki.
cd lib/hpg-libs
git checkout master
cd ../..
git checkout master
However, when I call scons:
scons: Reading SConscrip…
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## Use Case
Better handling and standardization of metadata from multiple formats. Instead of having many different metadata formats it would be great to have a single object to handle them all.
#…
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**PHASE I** (Jan 2022)
Current build is failing due to old version of Jenkins docker image. Main goal of this work is to have an updated working environment to test scl python 3.8 on CentOS 7
Seve…
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## Update
So it seems as if deleting an image file on windows in the same session that is was added via `QuPathProject.add_image` causes a Permission exception on Windows.
Causes I'm investigati…