CellProfiler python-bioformats issues

CellProfiler / python-bioformats

Read and write life sciences file formats

Other

125 stars 45 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Bug in opening Olympus *.vsi metadata for multi-dimensional (multiZ) files.

#168 LyesSp opened 3 months ago
0
Can't get well plate information from OMEXML

#167 JKelle opened 4 months ago
0
Fixing exception in some OME multiplex files that still return isRGB=True

#166 rgluskin opened 5 months ago
0
Upgrade bioformats_package.jar

#165 Sravani-K opened 6 months ago
0
Array too large Exception when using reader.read()

#164 nishantshakya opened 9 months ago
0
extract metadata from VSI files

#163 LibbyLi667 opened 1 year ago
0
OMEXML of CZI contains only one channel in DisplaySetting

#162 KiraUnderwood opened 1 year ago
0
How to get the tile images in multiprocessing

#161 InfinityBox opened 1 year ago
0
Make dependencies on boto3 optional

#160 jhnnsrs opened 1 year ago
0
Unable to load CH5 File

#159 roshankern opened 2 years ago
8
Update link: OME-XML schema documentation

#158 YoussefAyachii opened 2 years ago
0
Improve image reader selection function

#157 DavidStirling opened 2 years ago
0
Long and possibly multiple exceptions while using the package

#156 vbmade2000 opened 2 years ago
2
Update to latest java version?

#155 kmccormickTetra opened 2 years ago
2
swap from log4j to logback

#154 bethac07 closed 2 years ago
3
Remove outdated references to log4j

#153 bethac07 closed 2 years ago
0
log4j security issue

#152 claycoleman closed 2 years ago
5
How to extract metadata?

#151 vbmade2000 opened 2 years ago
1
Add the 3i SlideBook jar to the list of jars if present

#150 ehrenfeu opened 3 years ago
1
Tests/physical size

#149 ehrenfeu opened 3 years ago
1
Generate version info from git tags

#148 ehrenfeu opened 3 years ago
1
`bioformats.__version__` should print package version (reloaded)

#147 ehrenfeu opened 3 years ago
0
Instantiate file reader with stream instead of path

#146 evan-anderson-ts opened 3 years ago
0
Failing to extract OIR metadata

#145 bethac07 opened 3 years ago
0
How to install in readme

#144 wimpomp opened 3 years ago
0
Bioformats not finding Python Javabridge?

#143 u2056710 opened 3 years ago
0
Conda fails to install python-bioformats- incompatible with python 3?

#142 markemus opened 3 years ago
5
Need to pass CFLAG to get pip/developer (python setup.py) installation to work

#141 zacsimile opened 3 years ago
0
Having a trouble to install it in ubuntu?

#140 Yuvi-416 closed 3 years ago
3
Trouble converting .bif slides into .png

#139 rashindrie closed 1 year ago
0
It´s related about .ndpi file extension?

#138 Yuvi-416 opened 3 years ago
0
Suppressing debug and info logging?

#137 markemus opened 3 years ago
5
Trying to log an error results in another error

#136 manthey opened 3 years ago
0
AttributeError: 'OMETiffWriter' object has no attribute 'class_name'

#135 markemus opened 3 years ago
1
slide functions

#134 0x00b1 closed 2 years ago
0
Is bioformats.OMEXML.set_image_count() implemented correctly?

#133 alam-shahul opened 3 years ago
0
Bright field Images Are Pink

#132 arielleleon opened 3 years ago
0
Update bioformats package JAR to 6.5.1

#131 alejoe91 closed 3 years ago
1
Pin dependencies

#130 DavidStirling closed 3 years ago
0
Incorrect Image Reader Selected

#129 Nicholas-Schaub opened 4 years ago
0
BioFormats 6.5.0

#128 0x00b1 closed 3 years ago
4
Bump .jar to something in the 6 family

#127 bethac07 closed 3 years ago
0
getGlobalMetadata returns empty Hashtable for LIF files on python-bioformats 1.5.2

#126 zacsimile opened 4 years ago
0
reading tif with >3 channels returns just 3 channels

#125 tamkaho opened 4 years ago
0
Added rectangle ROIs and TiffData to omexml.py

#124 thomasmfish closed 4 years ago
3
Install on windows 10 fails

#123 jaydoc opened 4 years ago
4
bioformats.write_image pixels problem

#122 goodjs1 opened 4 years ago
0
OMETiffWriter Error - has no attribute 'class_name'

#121 Nicholas-Schaub closed 4 years ago
0
Getting Exact Time Values for Timeseries Image Stack

#120 sbowerma opened 4 years ago
0
Error opening Tif file with bioformats?

#119 cudmore opened 5 years ago
0