CellProfiler python-bioformats issues

CellProfiler / python-bioformats

Read and write life sciences file formats

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issues

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How do I turn off debug output? When I read the image, it produces a lot of output

#171 CDPDisk opened 1 day ago
2
Bumpy to 4.1.0

#170 gnodar01 closed 2 months ago
0
ModuleNotFoundError: No module named 'numpy' when installing python-bioformats

#169 d4nvjpl0ng4n opened 3 months ago
1
Bug in opening Olympus *.vsi metadata for multi-dimensional (multiZ) files.

#168 LyesSp opened 8 months ago
0
Can't get well plate information from OMEXML

#167 JKelle opened 9 months ago
0
Fixing exception in some OME multiplex files that still return isRGB=True

#166 rgluskin opened 10 months ago
0
Upgrade bioformats_package.jar

#165 Sravani-K opened 11 months ago
0
Array too large Exception when using reader.read()

#164 nishantshakya opened 1 year ago
0
extract metadata from VSI files

#163 LibbyLi667 opened 1 year ago
0
OMEXML of CZI contains only one channel in DisplaySetting

#162 KiraUnderwood opened 1 year ago
0
How to get the tile images in multiprocessing

#161 InfinityBox opened 1 year ago
0
Make dependencies on boto3 optional

#160 jhnnsrs opened 2 years ago
0
Unable to load CH5 File

#159 roshankern opened 2 years ago
8
Update link: OME-XML schema documentation

#158 YoussefAyachii opened 2 years ago
0
Improve image reader selection function

#157 DavidStirling opened 2 years ago
0
Long and possibly multiple exceptions while using the package

#156 vbmade2000 opened 2 years ago
2
Update to latest java version?

#155 kmccormickTetra opened 2 years ago
2
swap from log4j to logback

#154 bethac07 closed 2 years ago
3
Remove outdated references to log4j

#153 bethac07 closed 2 years ago
0
log4j security issue

#152 claycoleman closed 2 years ago
5
How to extract metadata?

#151 vbmade2000 opened 3 years ago
1
Add the 3i SlideBook jar to the list of jars if present

#150 ehrenfeu opened 3 years ago
1
Tests/physical size

#149 ehrenfeu opened 3 years ago
1
Generate version info from git tags

#148 ehrenfeu opened 3 years ago
1
`bioformats.__version__` should print package version (reloaded)

#147 ehrenfeu opened 3 years ago
0
Instantiate file reader with stream instead of path

#146 evan-anderson-ts opened 3 years ago
0
Failing to extract OIR metadata

#145 bethac07 opened 3 years ago
0
How to install in readme

#144 wimpomp opened 3 years ago
0
Bioformats not finding Python Javabridge?

#143 u2056710 opened 3 years ago
0
Conda fails to install python-bioformats- incompatible with python 3?

#142 markemus opened 3 years ago
5
Need to pass CFLAG to get pip/developer (python setup.py) installation to work

#141 zacsimile opened 3 years ago
0
Having a trouble to install it in ubuntu?

#140 Yuvi-416 closed 4 years ago
3
Trouble converting .bif slides into .png

#139 rashindrie closed 1 year ago
0
It´s related about .ndpi file extension?

#138 Yuvi-416 opened 4 years ago
0
Suppressing debug and info logging?

#137 markemus opened 4 years ago
5
Trying to log an error results in another error

#136 manthey opened 4 years ago
0
AttributeError: 'OMETiffWriter' object has no attribute 'class_name'

#135 markemus opened 4 years ago
1
slide functions

#134 0x00b1 closed 2 years ago
0
Is bioformats.OMEXML.set_image_count() implemented correctly?

#133 alam-shahul opened 4 years ago
0
Bright field Images Are Pink

#132 arielleleon opened 4 years ago
0
Update bioformats package JAR to 6.5.1

#131 alejoe91 closed 4 years ago
1
Pin dependencies

#130 DavidStirling closed 4 years ago
0
Incorrect Image Reader Selected

#129 Nicholas-Schaub opened 4 years ago
0
BioFormats 6.5.0

#128 0x00b1 closed 4 years ago
4
Bump .jar to something in the 6 family

#127 bethac07 closed 4 years ago
0
getGlobalMetadata returns empty Hashtable for LIF files on python-bioformats 1.5.2

#126 zacsimile opened 4 years ago
0
reading tif with >3 channels returns just 3 channels

#125 tamkaho opened 4 years ago
0
Added rectangle ROIs and TiffData to omexml.py

#124 thomasmfish closed 4 years ago
3
Install on windows 10 fails

#123 jaydoc opened 5 years ago
4
bioformats.write_image pixels problem

#122 goodjs1 opened 5 years ago
0