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Tentatively labeling this a bug, but it may be an inherent limitation.
This query
```
{
"message": {
"query_graph": {
"edges": {
"e01": {
…
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[EDIT: this was the original motivation. The next post explains addressing this and more using a new API-level x-bte field]
This is a less-important + probably-easy part of "x-bte refactoring". Pre…
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In https://github.com/biothings/BioThings_Explorer_TRAPI/issues/569, we created the semmeddb2 API that aggregates records by unique subject-predicate-object triples, and computes `pmid_count` and `pre…
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Provide a config option for the default schema to load; we can still use biothings as a default for now, but can also move to schema.org or a different schema in the future.
AC:
- allow empty schema…
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A robust search will take a method, get all possible terms for it, and search for those. I'm not sure the best way to implement this... I was thinking of looking at Jonathan's work here: https://gith…
vsoch updated
9 years ago
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E.g https://kba.ncats.io/beacon/biothings-explorer/concepts?keywords=SLC2A1
empty list
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Orphanet provides gene-disease and disease-phenotype associations for rare diseases under at CC-BY 4.0 license.
See link for "Genes associated with rare diseases" in http://www.orphadata.org/cgi-…
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[UPDATED]
We'll update to [biolink-model 4.1.6](https://github.com/biolink/biolink-model/releases):
* it has inverses for all new predicates (4.1.4)
* has some SEMMEDDB mappings we use when gener…
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Reasoning over the node and edge hierarchies would enable users to easily adjust the granularity of their BTE queries. For example, users should be able to configure BTE to expand (or to not expand) …
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Given #1 efforts, it seems that the next efforts could be focused on ingesting side effect data such as SIDER and and the FDA FAERS systems.
Since BioThings is already working on SIDER and we alrea…