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Hi,
I've ran PrePareAA with tumor.sorted.bam file (WGS) with the code below and no error message shown in the log file.
```
python3 ~~~~~/PrepareAA.py \
--output_directory ${AnalysisPath}…
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Dear all,
I have applied the rDCM method to dysconnective areas (dysconnective areas are defined in glioma patients, where the correlation values of the bold signals deviate over a certain standar…
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Hi there,
Thank you for your package! Currently the github dev version of the package (1.1.3) works for me to readXenium() and countMolecules().
The readXenium() function reads in an object incl…
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Why is my Dice score only 78% and HD95 over 30 when running infenrence?
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Thank you and your team for inventing such a user-friendly tool. I encountered some issues while using infercnv, which left me very confused.
Firstly, in the CreateInfercnvObject function, if a fi…
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### Description
We want to update SPM12 and CAT12 to a more recent version; it probably makes sense to update both at the same time given their interdependence, and carefully test several scenarios…
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Hi,
In the paper (SpatialDWLS: accurate deconvolution of spatial transcriptomic data), in figure 2C there was a bar plot of the different composition of deconvoluted cell types generated - this gr…
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You use isensee2017_model for training, and the activation function is set to 'sigmoid'. Can you please explain why you use the 'sigmoid' activation function in the final layer when it is multi-class …
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**Is your feature request related to a problem? Please describe.**
Formatting the input directory for the Brain Tumor specialized applications is very complicated, where files need to be placed in …
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Hi guys right i have project in brain tumor classification, but i'm dealing with this error for about 3 weeks, this is the error message
> ERROR:root:Error processing image {'id': 'tumor-44.png', '…