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Hi,
I am looking into 6mA methylation and I have done a locus plot for 6mA at the the AT motif.
I just want to clarity the genome-CpG plot on the locus plots - does this therefore represent ge…
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```php
function test($param = new Foo) {}
```
currently there's no way to see that `$param` has a default value `new Foo`. I don't think we currently have the concept of default/fallback argument…
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We need to reuse the same models in multiple apps. Right now just crowd.Bible and cpg-server. Currently cpg-server has extra columns of tables that crowd.Bible does not have so we will just merge the …
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Hi all,
I would like to know how can we obtain the global methylation % of a genome using modkit pileup.
I know that with the fraction modified I Can derive for example the % of methylated cpg, but …
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Hi Akalin,
I'm getting the following error when uniting my sample with the following code:
```
meth5,000,000 and less then 10,000,000; this returned the error:
```
## Error in vecseq(f , …
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Hi there,
I have a CpG methylation level matrix (gene by cell), and I'm curious is there any way to use DeepCpG tool to impute the methylation level on the genes?
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Dear author,
I am deeply intrigued by your epigenetic clock program. However, while running your program, I noticed some missing CpGs in my RRBS data. Could you advise if it's feasible to use your …
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The following warning is produced when running fuzzyc2cpg on the project `input` folder:
`Using deprecated CPG format with METHOD_INST nodes.`
Update the CPG generator to use the latest CPG form…
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Dear Raymond,
Thank you for your previous help on "input methylRaw object #46": methyldacker works very good and fast for us!
I'm sorry but we need again your help!
We have done the analysis for DM…
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Hello, Does this repository implement the java method cpg extraction?