sartorlab methylSig issues

sartorlab / methylSig

R package for DNA methylation analysis

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issues

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Is it possible to use bedgraphs from methyldackel that are not destranded?

#55 bioinfoMMS closed 12 months ago
3
Input for methylsig

#54 Yaseswini closed 1 year ago
1
DMR results and methylation level

#53 chantisakee opened 1 year ago
2
Convert previous bismark file to new methylsig input

#52 Yaseswini closed 1 year ago
2
Error in base::rowSums(meth_mat[, case_idx]) : 'x' must be an array of at least two dimensions

#51 powerhorse1986 opened 1 year ago
2
Error: C stack usage 10847362 is too close to the limit

#50 Carota-1 closed 1 year ago
1
methylSig not working for test data

#49 mapostolides closed 3 years ago
6
Problem with the tile_by_windows() function

#48 marin-e closed 4 years ago
3
diff_methylsig not working on tile_by_windows() object

#47 anairlema opened 4 years ago
8
input methylRaw object

#46 anairlema closed 4 years ago
1
clarification on local window size

#45 shawpa closed 4 years ago
1
Allow user to select percentiles for calculating methylation differences on a numerical covariate

#44 sixone11 opened 4 years ago
1
differences in pvalues after updating methylSig

#43 shawpa opened 4 years ago
11
Problem while running diff_methylsig()

#42 srialle opened 4 years ago
9
Pull Bioc_3_10 into master for Bioconductor submission

#41 rcavalcante closed 4 years ago
0
Side-by-side with old methylSig vignette

#40 rcavalcante closed 4 years ago
0
Main vignette

#39 rcavalcante closed 4 years ago
0
Genomic visualization function

#38 rcavalcante opened 4 years ago
1
Filter function by regions

#37 rcavalcante closed 4 years ago
0
MethylSig DSS test function

#36 rcavalcante closed 4 years ago
1
MethylSig test function

#35 rcavalcante closed 4 years ago
0
Binomial test function

#34 rcavalcante closed 4 years ago
0
Filter function to remove loci with insufficient coverage in samples-per-group

#33 rcavalcante closed 4 years ago
0
Tile by regions function

#32 rcavalcante closed 4 years ago
0
Tile by windows function

#31 rcavalcante closed 4 years ago
0
Filter function to mark C/T and G/A SNPs

#30 rcavalcante opened 4 years ago
0
Filter function to mark loci in samples outside of [min_count, max_count]

#29 rcavalcante closed 4 years ago
0
Build small test data

#28 rcavalcante closed 4 years ago
0
Refactor methylSigReadData

#27 rcavalcante closed 4 years ago
0
Fix bsseq function parameters

#26 rcavalcante closed 4 years ago
0
Replace in situ SNP database with SNPlocs resources

#25 rcavalcante closed 4 years ago
0
Remove seqinfo attributes from BSseq objects

#24 rcavalcante closed 4 years ago
0
install error

#23 runningsnail2333 closed 5 years ago
3
methylSigReadData bug

#22 JLGlass closed 4 years ago
11
Fix `Seqinfo` issues

#21 rcavalcante closed 5 years ago
0
v0.5.0 Transition to Bioconductor classes

#20 rcavalcante closed 5 years ago
1
merging percent methylation with methylation differences output

#19 shawpa closed 4 years ago
0
methylSigReadData error

#18 shawpa closed 6 years ago
4
Sample contributions to mean methylation

#17 bmreilly closed 8 years ago
2
Error with methylSigTile

#16 ArsenaultResearch closed 6 years ago
8
v0.4.3-bugfix

#15 rcavalcante closed 8 years ago
1
Confusion using methylSigCalc: min.per.group

#14 bmreilly closed 8 years ago
11
Bugfix: Check for empty countInvalidList in readMethylSigData

#13 rcavalcante closed 8 years ago
1
chrM extends way past chromosome limit on tiling

#12 rcavalcante closed 8 years ago
7
Last row gives all NA

#11 rcavalcante closed 8 years ago
1
Update master to 0.3.2 Documentation updates

#10 rcavalcante closed 9 years ago
0
Update master to 0.3.1

#9 rcavalcante closed 9 years ago
0
Increased degrees of freedom by 2 in the case of T.approx = T

#8 rcavalcante closed 9 years ago
0
Bug fix for issue #6

#7 rcavalcante closed 9 years ago
0
Bug introduced by fix to issue #3

#6 rcavalcante closed 9 years ago
0