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After #201 gets merged,
Starting with `cwltool.resolver`:
- [ ] adds support for resolver plugins using the `cwltool.resolver` [entry point](https://setuptools.readthedocs.io/en/latest/pkg_resourc…
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The "CODEX v2" data layout significantly differs from what we've handled in the past. Using sample data from various groups, investigate what will need to be modified in our code to handle PhenoCycler…
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If Schema SALAD `resolve_ref` method is used to parse an empty file, the returned error message is counter-intuitive.
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### Inputs
test.cwl:
```
cwlVersion: v1.0
class: CommandLineTool
baseCommand: ['true']
inputs:
- id: param
type:
type: array
items: string
inputBinding:
pre…
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Here is the traceback of the exception that I get when I run the command `python funnel.py --gce gce_config.yaml test/hashsplitter-workflow.cwl --input gs://`:
```
Unexpected exception
Traceback (mos…
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## Expected Behavior
Allow user to specify network access in cwltool:overrides OR explictly error out saying this is not an acceptable override.
## Actual Behavior
Tell us what happens instead…
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When I pack a conformance test that contains an enum type (e.g. https://github.com/common-workflow-language/cwl-v1.2/blob/main/tests/anon_enum_inside_array.cwl) the packed workflow turns the enum symb…
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```
cwltool --version
/Users/kghose/.venvs/toil/bin/cwltool 3.0.20200324120055
```
The following bash script is valid
```
set -xv
echo \
"A new line" \
"Another line" \
"Boo"
``…
ghost updated
4 years ago
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## Expected Behavior
cwltool --print-rdf should use conventional valid namespaces where they exist.
## Actual Behavior
Wrong prefix for the `rdfs` namespace, seems to be caused by `` being in…
stain updated
7 years ago
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cwltool [currently](https://github.com/common-workflow-language/cwltool/blob/1a839255795882894b4bbfea6d909a74cacb1d6a/cwltool/expression.py#L28) allows symbols in parameter references to contain any c…