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Situation: I run `assnake result dada2-filter-and-trim --preset def -d $DNAME gather -j 50 --run`
It returned the result I was not pleased with. I changed a preset and run again. Then, I realised, th…
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In the use of dada2 denoising of double end sequence, opened a screen background, there will be a mistake“An error was encountered while running DADA2 in R (return code 1), please inspect stdout and s…
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Dear Authors,
Congrats on this huge task and thanks for creating this resource.
When exploring the data at family level, I noticed an issue regarding taxonomy that was highlighted couple of year ba…
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I think it will be useful to use hashed version of ASV's (from DADA2 tables for example) to query on them in dbBact.
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1.dada2 的 chimera killing 功能 看能不加進去
2."multiplex_cpDNAbarcode_clean.txt" 這個 應該要當成一個變數 傳進去 比較對
3."log_dada2.txt" 應該要跟其他result files 放一起比較合理
4.可能有人 不 清楚 要先cd 去那裏執行 powerbarcoder.sh，最好全都改寫成傳參寫法的絕對路徑
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I have the output of singleM. But I wanted to ask if I can use the genes for example calculate and visualize the individual genes richness, etc or this is meant to use the singleM as a whole without a…
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Hi @benjjneb,
Thanks for your efforts developping dada2 which contributed to revolutionise the analysis of 16S data.
We are working on the dynamic of fecal microbiota using in vitro systems and …
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I work on MicrobiomeDB which puts me in the similar business to yours of wrapping `dada2` except our code is less nice (there are some tools in https://github.com/VEuPathDB/DJob/tree/microbiomedb17/Di…
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Hi all, I was trying to get the latest version of Anacapa to run through the Singularity container and ran into a few lines of code that need fixing to get Anacapa to run. The first is an erroneous (a…