wwood singlem issues - Githubissues

wwood / singlem

Novelty-inclusive microbial community profiling of shotgun metagenomes

http://wwood.github.io/singlem/

GNU General Public License v3.0

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issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

Estimation of absolute abundances

#193 IrSoler opened 1 week ago
0
Comparing metagenome profiles with publicly available profiles from sandpiper

#192 adityabandla opened 3 weeks ago
1
I want to keep the singleM for both prokaryiotic and eukaryotic

#191 lcamVz opened 1 month ago
1
problems combining otu tables to one

#190 camillaln opened 2 months ago
3
Drag out certain reads based on SingleM classification?

#189 NebulaSL opened 2 months ago
4
Multiple DIAMOND best hits detected for 'CL100090007L2C013R069_386072/1'.

#188 chenjh356 closed 2 months ago
3
Can I use the singleM output based on the individual genes for analysis?

#187 lcamVz opened 2 months ago
3
Recommendations for using long-read datasets

#186 Serka-M opened 3 months ago
1
Fix abspath not consistently applied

#185 AroneyS closed 2 months ago
1
fix more supplement threads issues

#184 AroneyS closed 3 months ago
0
Creating new metapackage with singleM supplement

#183 aprabhu90 closed 2 months ago
4
raise Exception("Bad SingleM metapackage version: %s" % str(v))

#182 kellynntan closed 4 months ago
2
supplement: restrict polars threads

#181 AroneyS closed 4 months ago
0
ETA on updated metapackage for GTDB Release09-R220

#180 julianzaugg closed 4 months ago
9
Usable with metatranscriptomes?

#179 AaronAOliver closed 4 months ago
2
smafa encountered the DeserializeBadBool error when trying to decode the specified database file

#178 yinjunshiliu closed 4 months ago
3
smafa encountered the DeserializeBadBool error when trying to decode the specified database file

#177 yinjunshiliu closed 4 months ago
0
metapackage versioning error?

#176 xvazquezc closed 5 months ago
4
zenodo_backpack.ZenodoBackpackMalformedException

#175 dawnmy closed 5 months ago
2
Reset tempfile cache after pipe

#174 AroneyS closed 4 months ago
1
Add pipe and condense figure to docs.

#173 rzhao-2 closed 5 months ago
0
Update to metapackage v5

#172 rzhao-2 closed 6 months ago
0
`singlem summarise --input-archive-otu-table-list` incorrectly triggers an error

#171 luispedro closed 6 months ago
1
Fix supplement check for transcripts

#170 AroneyS closed 6 months ago
2
Microbial fraction over 100%

#169 kebow closed 4 months ago
3
singlem supplement command failed to finish successfully

#168 VadimDu closed 6 months ago
4
Microbial Fraction

#167 Naturalist1986 closed 6 months ago
3
Binned populations from appraise not matching numbers extracted from genomes

#166 adityabandla opened 7 months ago
3
Inconsistent numbers in appraise

#165 adityabandla opened 7 months ago
5
Some potentially useful options to consider?

#164 adityabandla opened 7 months ago
0
Error running --cluster for archive OTU tables

#163 adityabandla opened 7 months ago
1
Clustering seems very slow

#162 adityabandla closed 7 months ago
1
Combining archive otu tables error

#161 adityabandla closed 6 months ago
0
Question about taxonomic profile and combined files

#160 susheelbhanu closed 7 months ago
2
Conda installation failing

#159 susheelbhanu closed 7 months ago
1
singlem supplement KeyError: 's__spire_mag_01111928'

#158 ellyyuyang closed 7 months ago
2
supplement: Fix log msg.

#157 wwood closed 7 months ago
0
diamond crashes with singlem 0.16.0

#156 xvazquezc closed 5 months ago
6
Running docker image with apptainer

#155 shaze closed 8 months ago
1
singlem data --output-directory OUTPUT_DIRECTORY encountered several issues

#154 LvbBo closed 4 months ago
3
Fix appraise found_in column missing when no data

#153 AroneyS closed 8 months ago
1
can you convert between regular and archive format?

#152 rrohwer closed 4 months ago
1
singlem incorrectly parse sample name with paired-end data

#151 fplazaonate opened 10 months ago
5
OSError: [Errno 24] Too many open files during in running singlem pipe

#150 WoCer2019 closed 9 months ago
2
Fix appraise test

#149 AroneyS closed 10 months ago
0
Update read_fraction.md

#148 EisenRa closed 10 months ago
1
SingleM stuck running on specific SRAs

#147 AnneliektH opened 10 months ago
1
Key error when running singlem data

#146 Ge0rges closed 11 months ago
3
Fix appraise plot

#145 AroneyS closed 11 months ago
1
singlem data error

#144 rzhan186 closed 12 months ago
3