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We need something like the code below showing how to save clustering results.
```
from dipy.io.streamline import StatefulTractogram, save_tractogram, load_tractogram, Space
from dipy.data.fetche…
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We're using 3dVolreg (from AFNI), copying the procedures from BOLD counterparts. In the long term, I think education should do this better than anything else, but in the short term, we may want to tal…
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## Description
Hi, I have been using the DIPY free-water corrected DTI function, fwdtimodel.fit() on multi-shell DWI data using b-values [200, 500, 1000]. It runs fine, but I have some concerns about…
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Looking at the code, it seems there's currently two separate command-line options: one chooses the software to use, the other chooses the model to fit. I don't think this is the right choice: not all …
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I am trying to use afqbrowser after succesfully running pyAFQ. When I run afqbrowser-assemble _path/to/pyAFQ/outputs_, I am using the 'tract_profiles.cvs' file in the afq output folder for the file pa…
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We are seeing this error message.
```
Traceback (most recent call last):
File "/export/prod/5d891bd313501c269dd88cd4/5d8a1b2e13501cacc3d8b824/snr_in_cc.py", line 60, in
gtab = gradient_tabl…
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We use ICBM 2009c. Apparently the recobundles atlas is in ICBM 2009a space. I don't know the difference. But this is quoting from the README file that comes with the Atlas_80_Bundles
**All the bund…
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## Description
There isn't currently a direct way to compute the sigma value in the CLI framework for `dipy_fit_dti` or `dipy_fit_dki` with the method as `RESTORE`. Several noise estimation sigma op…
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#### Describe the bug
I want to plot multiple connectograms on a single figure. For that I am following the tutorial and call `mne_connectivity.viz.plot_connectivity_circle` in a for-loop each time…
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### What would you like to see added in this software?
PIESNO calculation depends on the number of coils that were used for measurement and the recon algorithm. See [dipy docstring](https://github.co…