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Getting this intermittent test failure in CI: https://github.com/datasette/datasette-enrichments-gpt/actions/runs/8863259601/job/24337099138
```
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11…
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Hello!
I am doing the analysis of Go terms for Arabidopsis.
I have my data. I added genes Up and Dowm regulates separately.
For the Go enrichment analysis I use the Araport11 background,
And the f…
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Idea by @katyb
When computing similarities between datasets and AS/extraction sites during HRApop Construction & Enrichment Pipeline, currently (v.10.2), we count the CTs that the dataset contribute…
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Let's say that you have an answer that has a bunch of nodes forming a graph. You have support edges among all the nodes. Are there papers that occur in many of the edges? These papers might be pap…
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## Description
...
## Minimal reproducible example
```python
import numpy as np
import os
import scanpy as sc
import squidpy as sq
sc.logging.print_header()
print(f"squidpy=={…
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## Prerequisites
- [ ] This issue is an EPIC issue (add label: EPIC).
- [ ] This issue is an EPIC TASK (add issue to EPIC description).
Select one OR another:
- [x] I'll create a PR to imple…
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## Description
Behind a corporate proxy, the Virustotal enrichment connector will fail
## Environment
1. OS: RedHat 7, on Docker 1.13.1
2. OpenCTI version: 5
3. OpenCTI c…
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Discussion in Roberts Lab that it isn't good practice to split up vs down regulated genes based on FC. Maybe instead we need to do functional enrichment on all DEGS regardless of direction and then pl…
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When building signal track with MACS2, the FE signal in genome range where the coverage is very low will become very significant, because the denominator is near zero in that range. Could you assign a…
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## Use case
We are looking for a solution where we can send JSON data to custom Internal Enrichment Connectors. Right now no custom data can be sent when enriching an observable.
## Proposed Sol…