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* id: GO:0005085
* name: guanyl-nucleotide exchange factor activity
* def: _Stimulates the exchange of guanyl nucleotides associated with a GTPase. Under normal cellular physiological conditions,…
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[I advise holding off on this ticket for now but I need a place to make some initial notes. I will be editing this ticket as I go along]
I am with @dustine32 looking at integrating the TCs @thomasp…
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consider this model
http://noctua.geneontology.org/workbench/noctua-visual-pathway-editor/?model_id=gomodel%3A66b5638000001589
note there are two activities for EIF2S1
when these get rend…
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I realise no AmiGO work is going on right now but I have been meaning to report this for a while.
This is an example that I think it clear.
I am looking at the gene products annotated to the GO…
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Hi,
I have been using this wonderful package for a few years and it works great for my analysis of species like mouse and human data. Recently, I am working on the Gallus (chicken) and met some iss…
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Hi Daniel,
Just wanted to note that there are still duplicate edges in hetionet in the newest `integrate.ipynb`. Specifically, the following two types of relationships give duplicate edge errors wh…
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@Al-Murphy `MultiEWCE::prioritise_targets` could be further extended by identifying key regulators of gene sets. This way, we can target all candidate genes by targeting a single regulator gene:
Us…
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### Background
We've recently been facing the issue of not knowing what (annotation extension) relations to use between 'cell-cell adhesion' GO terms (and its descendants) and cell type CL ontology…
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Might be on the wrong tracker, but....
I noticed this issue when looking at a set of D.mel genes using the GO enrichment tool:
Toll signaling cameup:
GO biological process complete # # expec…