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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/xiaosaiyao/epiregulon
Confirm the following by ed…
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**Is your feature request related to a problem? Please describe.**
Markup in title and abstract often have an important meaning. Scientists care about them being displayed correctly.
Markup could be…
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**Describe the bug**
I am trying to run scenicplus on a Pig dataset. I have generated motif scores following the steps in `create_cisTarget_databases` `. I had to make multiple changes in the codeb…
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## Summary
If reasonably feasible, I would like to ask the dev team to add weighted feature sampling to the python lightgbm api. Weighted feature sampling is an integral part of the [iterative rand…
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**Describe the bug**
Thank you for the tool! I'm attempting to run pyscenic on an HPC using slurm. We've created a module from the docker container in order to run the CLI version. I've tried using a…
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"The Plant Biotic Interactions (PBI) program supports research on the processes that mediate beneficial and antagonistic interactions between plants and their viral, bacterial, oomycete, fungal, plant…
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This isn't an issue with the decoupler itself but rather a recommendation regarding the documentation of [TF activity enrichment](https://github.com/saezlab/decoupler-py/blob/d5926b6c59116e6a82d140c8a…
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I am doing Gene regulatory networks chapter.
When I ran this code:
outpath_adj = "adj.csv"
if not os.path.exists(outpath_adj):
!pyscenic grn {loom_path} {tfs_path} -o $outpath_adj --num_w…
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Opening this issue for @ahmad00m to record tasks for preparing a new expression dataset for the back-end database.
We are going to use data from this paper: Apweiler, E., Sameith, K., Margaritis, T…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ubioinformat/TraRe
Confirm the following by editi…