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### Description of the bug
Hi,
I have been using nf-core/rnasq for a long time, but with the update of Nextflow, I am receiving the following error messages. I downloaded my fastq files with asper…
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Dear all,
I have been having the following issue when installing panX. I followed the steps as in the site and used miniconda as indicated.
`Traceback (most recent call last):
File "./panX.py…
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Dear Authors,
I installed gms on fresh ubuntu 12.4
We had to manually add Paths variables to .bashrc
GENOME_SYS_ID=`cat /etc/genome/sysid`
GENOME_HOME="/opt/gms/$GENOME_SYS_ID"
PATH=/opt/openlava-…
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Dear authors,
I tried to run the Sequeduct demo pipeline https://github.com/Edinburgh-Genome-Foundry/Sequeduct_demo/
However, at the end of the pipeline, the PDF generated only the first 2 pages, …
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Hello,
I am working on TBI in killifish using bioinformatics approach.
I want to investigate killifish clusters and it’s subclusters as it is not very well studied. I want to discover the cell typ…
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Hi I am having issue while running snpEff for annotating the vcf file.The process is getting killed while running. What might be causing the issue?
Please see the error mentioned below
```
java…
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Hi, I would like to know how STAR usually handles highly variably gene sequences like V(D)J sequences that code for parts of the TCR / BCR (T-cell and B-cell receptors), please?
I guess it depends …
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Greetings,
I am trying to submit different genome files (.fasta .fna, .fa) to the Comprehensive Genome Analysis or Genome Annotation tools. Both returned this error (never happened before) -
*E…
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**Describe the issue**
I am analyzing whole genome sequencing(WGS) data in rice(Oryza.sativa) plants. When I use the following command to create the rice database, I encounter this problem. It should…
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Hi TAs, I encountered a problem when running the **gatk Funcotator** in the annotation step.
The command line I use is:
```bash
gatk Funcotator --data-sources-path /lustre1/share/references/funco…