alexdobin STAR issues - Githubissues

alexdobin / STAR

RNA-seq aligner

MIT License

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best practice for multi-mappers in scRNAseq data

#2164 Bessie92 opened 17 hours ago
0
remove extraenous OOB write

#2163 eternal-flame-AD opened 1 day ago
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STARsolo for Visium data

#2162 OluwayioseOA opened 1 day ago
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discordant not flagged

#2161 hwlim opened 2 days ago
0
Counts before collapsing and 5' end check

#2160 tsofiya opened 3 days ago
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soloMultiMappers for genes on chrX and chrY

#2159 NikicaJEa opened 5 days ago
0
index error: double free or corruption (!prev)

#2158 WT215 opened 1 week ago
0
STAR Diploid Genome Generate Feature Request

#2157 migbro opened 1 week ago
0
CIGAR and query sequence are of different length (samtools after STAR)

#2155 vitoriastavis opened 2 weeks ago
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--soloFeatures when analysing snRNA

#2153 onmyojiyys opened 2 weeks ago
0
Indel treated as SNP through mapping with Indel

#2152 cmarques2000 opened 2 weeks ago
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--soloStrand not working

#2151 Yenaled closed 3 weeks ago
1
Clarification on -outFilterMismatchNoverReadLmax Default 1.0 in STARsolo

#2150 eternalapple opened 3 weeks ago
0
cannot insert sequence on the fly because of strand GstrandBit problem

#2149 mital14 closed 4 weeks ago
1
Velocyto mapping summary indicating no unique reads

#2148 AnnaMaguza opened 4 weeks ago
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Corrupt Aligned.out.bam (2.7.6a)

#2147 btsherid opened 1 month ago
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ld: symbol(s) not found for architecture arm64

#2145 akhst7 closed 3 weeks ago
1
STARsolo: Segmentation fault (core dumped) after "Started mapping"

#2144 reliscu opened 1 month ago
0
using STAR to confirm crispr KO?

#2143 satzel opened 1 month ago
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solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* error: could not open input file /geneInfo.tab

#2142 xiangy-hu opened 1 month ago
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Aligning reads to transcripts

#2141 sagnikbanerjee15 opened 1 month ago
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Question about --outSAMmultNmax and TranscriptomeSAM

#2140 andresferben opened 1 month ago
0
Paired-end 10x (2x151 bp) segfaults with mouse but not with human index?

#2139 apredeus opened 1 month ago
2
EXITING: fatal error trying to allocate genome arrays, exception thrown: std::bad_alloc

#2138 Tinsusu opened 1 month ago
0
quant mode and sexual chromosomes

#2137 seoanezonjic opened 1 month ago
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hardclip reads from 5'

#2136 weitaiwu opened 1 month ago
0
Analysis of Cite-seq data with STARsolo

#2135 jfoedfjwofa opened 1 month ago
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EXITING: because of fatal INPUT file error: could not open read file

#2133 abeedhakhan closed 1 month ago
0
Possible to rerun STARsolo feature counting without alignment?

#2132 jamestwebber opened 1 month ago
1
Issue aligning PacBio reads with STARlong

#2131 diazdc opened 2 months ago
0
why are some SAM attributes marked as BAM-only?

#2130 ilia-kats opened 2 months ago
0
Read IDs changed by STAR in fastq output are not compatible with some downstream tools

#2129 calizilla opened 2 months ago
0
Metatranscriptomics slow mapping rate

#2128 ohickl opened 2 months ago
0
thoughts on STAR development team on splice/unsplice/ambigiuous reads classification.

#2127 mortunco opened 2 months ago
1
MGI DNBelab snRNA-seq preparation kit

#2126 ayeTown opened 2 months ago
0
why do i get such a small output file for STARsolo?

#2125 gmnmnm opened 2 months ago
1
make STAR error and unable to install gcc using homebrew

#2124 mahek3012 opened 2 months ago
0
Feature request for --quantTranscriptomeBan

#2123 dincarnato opened 2 months ago
1
Why is there no assigned gene when the sequence can be completely aligned

#2122 pandh0607 opened 2 months ago
0
Understanding variants SAM tags

#2121 Yenaled closed 2 months ago
1
Killed at generating Suffix Array index (genomeGenerate)

#2120 esraaelmligy opened 2 months ago
0
Long time genome indexing

#2119 esraagithub opened 2 months ago
0
Long time genome indexing

#2118 esraagithub opened 2 months ago
0
when I tried to generate the gene expression matrix, I can not generate .bam file with STAR 2.7.11b, 2.7.4a and 2.6.1d.

#2117 ZChen90 opened 2 months ago
1
Indexing the Reference Genome is not done in STAR

#2116 helenine opened 2 months ago
1
STAR human GRCH38

#2115 ZohreJ opened 2 months ago
0
The analysis indicators for Smart-seq2 seem abnormal.

#2114 hai178912522 opened 2 months ago
1
Output SAM file contains only QNAMEs from forward fasta not reversed

#2113 mirachirkova opened 2 months ago
1
Interaction between STARsolo and STAR diploid

#2112 mparker2 opened 2 months ago
3
Reads With Valid Barcodes=zero in STARsolo analysis

#2111 jfoedfjwofa opened 2 months ago
4