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It seems good to use hdf5 to store measurement data (instead of json).
Pymodaq offers a package to store and visualize such a file: https://github.com/PyMoDAQ/pydatamanager
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I propose adding the functionality to save the charge density information in a HDF5 format, which is already mentioned in #3.
This issue should serve as the main discussion point for the implementa…
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Test example:
```python
import pyiron
import pyiron_base.storage.hdfio
# --- replace pyiron_base.storage.hdfio.FileHDFio._open_hdf by wrapper to count calls
def _open_hdf(filename,mode="r",swmr…
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If an HDF5 error is emitted in a second thread, then at library close time an infinite loop will occur. `H5E_term_package()` will repeatedly try and fail to clean up its open identifiers, and an infin…
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Hello! Thanks for this awesome project.
I'm eager to use `h5py` in a JupyterLite / xeus-python custom env, but `h5py` doesn't have a `noarch` package on `conda-forge`, nor a `emscripten-wasm32` one…
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I'm reaching out regarding the dataset HDF5 file mentioned in our previous correspondence. Unfortunately, I'm encountering difficulty accessing the file through the provided link. Could you please sh…
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When HDF5 is used as a subproject - conflicts could occur with general named variables.
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Hi, not sure if this crate is maintained at all - but in any case, just letting you know that the existing `hdf5` crate has been yanked from crates index and is now replaced with https://github.com/al…
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Using Intel compiler provides ~50% speedup in walltime.
* module add null gcc/11.2.0 cmake-3.15.4 Intel_OneAPI-v2023 hdf5-1.14.2_P_intel_oneAPI fftw-3.3.10 gsl-2.8
* Create Makefile.comp.intelp…
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### Bug report
**Bug summary**
An arepo snapshot whose on-disk ParticleIDs data type is uint32 or uint64 is converted to float32 or float64, respectively.
The conversion can be traced back to…