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hansenlab
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minfi
Devel repository for minfi
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Error while reading the data using (read.metharray.exp)
#275
royamani
opened
1 month ago
0
EPIC v2 preprocessQuantile()
#274
psychesha21
opened
1 month ago
0
detectionP broken as of latest matrixStats update
#273
yhoogstrate
closed
2 months ago
0
EPIC V2 to EPIC V1
#272
PierreSolomon
opened
2 months ago
2
Changes for EPICv2
#271
jmacdon
closed
2 months ago
0
Loading minfi on MacOS
#270
mehmet-cay
closed
2 months ago
7
Construct RGChannelSet object from raw methylated and raw unmethylated csv files
#269
giuseppedelnapalle
opened
2 months ago
2
EPIC v2.0 - preprocessIllumina returning error
#268
chanmur
opened
2 months ago
1
Error encounter during EPIC methylation analysis
#267
sarah91-RA
opened
3 months ago
4
EstimateCellCounts with EPIC V2 data
#266
kimberzhu
opened
4 months ago
1
Fixes selection of probes by type in preprocessNoob.
#265
jonathonl
closed
2 months ago
1
preprocessNoob using incorrect row indices to Meth and Unmeth matrices
#264
jonathonl
opened
4 months ago
9
Custom minfi manifest and annotation packages
#263
dancingRNA
opened
4 months ago
0
preprocessSWAN fails to normalize RGChannelSet
#262
alexandernassar24
opened
5 months ago
0
how to combine EPIC and EPIC2 array data?
#261
aa20g217
opened
5 months ago
4
Problem in qcReport
#260
lilwo
opened
5 months ago
2
Fixing cpgCollapse bug
#259
rafalab
closed
5 months ago
0
Problem with preprocessIllumina
#258
Zszywek
closed
6 months ago
5
getUnMeth() didn't work for EPIC v2
#257
atomnh
opened
6 months ago
2
Upcoming change to DelayedArray::realize()
#256
hpages
closed
4 months ago
7
How to analyze A/B compartment after using liftOver function to annotate hg38
#255
h20gg702
opened
7 months ago
0
combine EPIC and EPICv2 array leads to less than 200k of probes remained
#254
yeswzc
closed
7 months ago
0
lm.fit Error during preprocessFunnorm for EPIC V2 array
#253
ahwanpandey
closed
8 months ago
2
Compatibility with Illumina Mouse Array and EPIC Version 2
#252
chiaraherzog
opened
10 months ago
0
No IDAT files with both Red and Green channel were found (IDAT files named 'red' and 'grn' instead of 'Red' and 'Grn')
#251
Manoswini-02
closed
10 months ago
5
Error I preprocess quantile
#250
simonjuleseric2
opened
11 months ago
0
Error in get(referencePkg): object 'FlowSorted.Blood.EPIC' not found
#249
yr542
opened
11 months ago
0
read.metharray.sheet Basename issue
#248
keeblee
opened
11 months ago
0
Custom Manifest
#247
demis001
opened
1 year ago
0
batch correction using control probe
#246
bioinfonext
opened
1 year ago
0
Illumina Mouse Methylation Array Annotation into minfi
#245
edco84
opened
1 year ago
0
Whether the minfi can analzye Infinium EPIC V2 product?
#244
AliceCheng7
opened
1 year ago
1
wrong probe types used for EPIC samples in `preprocessNoob` due to b2-based manifest and b4-based annotation
#243
maximilian-leitheiser
opened
1 year ago
0
Update estimateCellCounts.R
#242
metamaden
closed
2 months ago
0
Error in `cpgCollapse` if the `GenomicRatioSet` doesn't have any copy number values
#241
ChristopherEeles
opened
1 year ago
1
Support for EPIC v2.0 arrays?
#240
karoliskoncevicius
opened
1 year ago
9
preprocessFunnorm: Error in kmeans (initial centers are not distinct)
#239
mikldk
opened
1 year ago
7
Error with bumphunter during p-value estimation
#238
alex-d13
opened
1 year ago
1
Always showing "blood" in meanPlot even for DLPFC mixture
#237
randel
opened
1 year ago
1
Installation Error on RStudio Cloud
#236
JosephGatto
opened
1 year ago
2
Analyse Data from GEO with minfi
#235
AzlanNI
closed
1 year ago
1
Can't download minfi with the recomended BiocManager
#234
AzlanNI
closed
1 year ago
0
27k array issue with preprocess
#233
biostars-nyc
opened
1 year ago
0
hg38
#232
etiennedanis
opened
1 year ago
1
Bug in densityBeanPlot function
#231
MitaliKatoch
opened
2 years ago
0
BUG: *** caught segfault ***
#230
DUAN-GAO
opened
2 years ago
0
Error in preprocessNoob(RGset, verbose=10) - script killed
#229
Fjeanneret
closed
2 years ago
4
meanPlot in EstimateCellCounts2 and batch effects
#228
bazyliszek
opened
2 years ago
0
Does minfi support Infinium Mouse Methylation BeadChip Array data?
#227
MANZHAOHUI
opened
2 years ago
0
Can't read IDAT with this error.
#226
kwanghoon821
opened
2 years ago
0
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