hansenlab minfi issues - Githubissues

hansenlab / minfi

Devel repository for minfi

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Error in preprocessNoob(RGset, verbose=10) - script killed

#229 Fjeanneret closed 2 years ago
4
meanPlot in EstimateCellCounts2 and batch effects

#228 bazyliszek opened 2 years ago
0
Does minfi support Infinium Mouse Methylation BeadChip Array data?

#227 MANZHAOHUI opened 2 years ago
0
Can't read IDAT with this error.

#226 kwanghoon821 opened 3 years ago
0
Specify one or multiple directories for idat files other than the base directory of the samplesheet (read.metharray.sheet).

#225 bana-ne opened 3 years ago
2
[Issue] Unable to load manifest package?

#224 GarlicPaasta opened 3 years ago
1
Incomplete User Guide

#223 DarioS opened 3 years ago
1
Cell count proportions sum more than 1

#222 ponche-de-kiwi opened 3 years ago
0
Bumphunter statistical stringency

#221 gremame opened 3 years ago
0
preprocessQuantile getSex error: -Inf median CN

#220 zxl124 opened 3 years ago
1
Supporting new species?

#219 zhen-fu opened 3 years ago
1
Warnings when reading data

#218 orzechoj opened 3 years ago
1
estimateCellCounts fails with IlluminaHumanMethylationEPIC

#217 snowpong closed 3 years ago
3
Made preprocessFunnorm() respect verbose=FALSE

#216 karoliskoncevicius opened 3 years ago
0
A/B compartment agreement across array platforms (450k and EPIC) and multiple datasets

#215 santanalele opened 3 years ago
2
gaphunter errors for input class matrix

#214 BenjaminPlanterose opened 4 years ago
0
read.metharray.exp function doesn't work

#213 Aikaterini-Chatzipli closed 4 years ago
2
Which dbSNP build is used in the getSnpInfo function

#212 nikolayaivanov closed 4 years ago
0
Error in creating RGSet using read.metharray.exp function in R

#211 kendrix10 closed 8 months ago
0
query regarding manifest/annotation file and trouble creating new manifest object

#210 prasundutta87 opened 4 years ago
3
Green and Red columns inverted in controlStripPlot

#209 MGiulia opened 4 years ago
1
query regarding using manifest and annotation in Minfi (EPIC Methylation array analysis)

#208 prasundutta87 opened 4 years ago
0
HDF5: Expose read_metharray2

#207 kasperdanielhansen opened 4 years ago
0
HDF5: Refactor annotation design

#206 kasperdanielhansen opened 4 years ago
0
HDF5: Make HDF5 stubs in code

#205 kasperdanielhansen opened 4 years ago
0
HDF5: Setup HDF5 testing

#204 kasperdanielhansen opened 4 years ago
7
minfi user guide query

#203 prasundutta87 opened 4 years ago
0
getAnnotation() details

#202 nikolayaivanov closed 4 years ago
1
Error in `preprocessFunnorm`

#201 kdkorthauer opened 4 years ago
9
Error with normalization

#200 nikolayaivanov closed 4 years ago
3
Discrepancy in number of probes

#199 VilainLab opened 4 years ago
0
preprocessIllumina function problem about bg.correct

#198 xuexingwangzhedishitian opened 4 years ago
0
Issue loading target files

#197 VilainLab closed 4 years ago
2
Memory usage by makeGenomicRatioSetFromMatrix

#196 timpeters82 closed 4 years ago
4
Error in read.metharray(basenames = commonFiles, extended = extended, : [read.metharray] Trying to parse different IDAT files, of different size and type.

#195 boseb closed 3 years ago
2
Incorporate Bayesian measurement error procedure into estimateCellCounts

#194 sandrews5 opened 5 years ago
2
minfi objects declare <Object with null pointer> in Rstudio

#193 wudustan closed 5 years ago
1
How can I subset a GenomicRatioSet?

#192 aminards closed 5 years ago
2
Error FlowSortedBloodEPIC on a cluster

#191 sindreleeodegard opened 5 years ago
1
How can I specify the number of columns for the legend in densityPlot?

#190 aminards closed 5 years ago
2
cpgCollapse bugfix

#189 rafalab closed 11 months ago
0
Loss of probes during preprocessIllumina

#188 LambertDorssers opened 5 years ago
6
CordBlood

#187 demis001 opened 5 years ago
0
error in minfi dmpFinder

#186 hope2003 closed 5 years ago
1
estimateCellCounts error

#185 ruizhang3333 closed 5 years ago
4
.cpgCollapse’ for signature ‘"data.frame"

#184 yeswzc opened 5 years ago
0
makeGenomicRatioSetFromMatrix function for EPIC data?

#183 priyatamapandey opened 5 years ago
1
getProbeType return different length of probe types

#182 ShannonSzeto opened 5 years ago
7
Error with `getAnnotation`

#181 LiNk-NY closed 5 years ago
2
Error in preprocessQuantile and preprocessFunnorm

#180 michaelnoe opened 5 years ago
5

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