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hansenlab
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minfi
Devel repository for minfi
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Specify one or multiple directories for idat files other than the base directory of the samplesheet (read.metharray.sheet).
#225
bana-ne
opened
2 years ago
2
[Issue] Unable to load manifest package?
#224
GarlicPaasta
opened
2 years ago
1
Incomplete User Guide
#223
DarioS
opened
2 years ago
1
Cell count proportions sum more than 1
#222
ponche-de-kiwi
opened
2 years ago
0
Bumphunter statistical stringency
#221
gremame
opened
2 years ago
0
preprocessQuantile getSex error: -Inf median CN
#220
zxl124
opened
3 years ago
1
Supporting new species?
#219
zhen-fu
opened
3 years ago
1
Warnings when reading data
#218
orzechoj
opened
3 years ago
1
estimateCellCounts fails with IlluminaHumanMethylationEPIC
#217
snowpong
closed
3 years ago
3
Made preprocessFunnorm() respect verbose=FALSE
#216
karoliskoncevicius
opened
3 years ago
0
A/B compartment agreement across array platforms (450k and EPIC) and multiple datasets
#215
santanalele
opened
3 years ago
2
gaphunter errors for input class matrix
#214
BenjaminPlanterose
opened
3 years ago
0
read.metharray.exp function doesn't work
#213
Aikaterini-Chatzipli
closed
3 years ago
2
Which dbSNP build is used in the getSnpInfo function
#212
nikolayaivanov
closed
3 years ago
0
Error in creating RGSet using read.metharray.exp function in R
#211
kendrix10
closed
3 months ago
0
query regarding manifest/annotation file and trouble creating new manifest object
#210
prasundutta87
opened
4 years ago
3
Green and Red columns inverted in controlStripPlot
#209
MGiulia
opened
4 years ago
1
query regarding using manifest and annotation in Minfi (EPIC Methylation array analysis)
#208
prasundutta87
opened
4 years ago
0
HDF5: Expose read_metharray2
#207
kasperdanielhansen
opened
4 years ago
0
HDF5: Refactor annotation design
#206
kasperdanielhansen
opened
4 years ago
0
HDF5: Make HDF5 stubs in code
#205
kasperdanielhansen
opened
4 years ago
0
HDF5: Setup HDF5 testing
#204
kasperdanielhansen
opened
4 years ago
7
minfi user guide query
#203
prasundutta87
opened
4 years ago
0
getAnnotation() details
#202
nikolayaivanov
closed
4 years ago
1
Error in `preprocessFunnorm`
#201
kdkorthauer
opened
4 years ago
8
Error with normalization
#200
nikolayaivanov
closed
4 years ago
3
Discrepancy in number of probes
#199
VilainLab
opened
4 years ago
0
preprocessIllumina function problem about bg.correct
#198
xuexingwangzhedishitian
opened
4 years ago
0
Issue loading target files
#197
VilainLab
closed
4 years ago
2
Memory usage by makeGenomicRatioSetFromMatrix
#196
timpeters82
closed
4 years ago
4
Error in read.metharray(basenames = commonFiles, extended = extended, : [read.metharray] Trying to parse different IDAT files, of different size and type.
#195
boseb
closed
2 years ago
2
Incorporate Bayesian measurement error procedure into estimateCellCounts
#194
sandrews5
opened
4 years ago
2
minfi objects declare <Object with null pointer> in Rstudio
#193
wudustan
closed
4 years ago
1
How can I subset a GenomicRatioSet?
#192
aminards
closed
4 years ago
2
Error FlowSortedBloodEPIC on a cluster
#191
EPICuser1
opened
4 years ago
1
How can I specify the number of columns for the legend in densityPlot?
#190
aminards
closed
4 years ago
2
cpgCollapse bugfix
#189
rafalab
closed
6 months ago
0
Loss of probes during preprocessIllumina
#188
LambertDorssers
opened
5 years ago
6
CordBlood
#187
demis001
opened
5 years ago
0
error in minfi dmpFinder
#186
hope2003
closed
5 years ago
1
estimateCellCounts error
#185
ruizhang3333
closed
5 years ago
4
.cpgCollapse’ for signature ‘"data.frame"
#184
yeswzc
opened
5 years ago
0
makeGenomicRatioSetFromMatrix function for EPIC data?
#183
priyatamapandey
opened
5 years ago
1
getProbeType return different length of probe types
#182
ShannonSzeto
opened
5 years ago
7
Error with `getAnnotation`
#181
LiNk-NY
closed
4 years ago
2
Error in preprocessQuantile and preprocessFunnorm
#180
michaelnoe
opened
5 years ago
5
Normalization: Error in kmeans
#179
royfrancis
opened
5 years ago
8
getBeta() long vectors not supported yet
#178
stewart999
opened
5 years ago
8
makeGenomicRatioSetFromMatrix function error?
#177
alfonsosaera
opened
5 years ago
2
getGenomicRatioSetFromGEO failed!
#176
cystone
opened
5 years ago
0
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