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hansenlab
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minfi
Devel repository for minfi
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Normalization: Error in kmeans
#179
royfrancis
opened
5 years ago
8
getBeta() long vectors not supported yet
#178
stewart999
opened
5 years ago
8
makeGenomicRatioSetFromMatrix function error?
#177
alfonsosaera
opened
5 years ago
2
getGenomicRatioSetFromGEO failed!
#176
cystone
opened
5 years ago
0
estimateCellCounts bug with 1 unique pData variable
#175
snlent
opened
6 years ago
0
unable to find an inherited method for function pData
#174
demis001
closed
6 years ago
6
Error when using the force=TRUE option in read.metharray.sheet
#173
james-e-barrett
closed
6 years ago
1
readGEORawFile() should return a RGChannelSet object
#172
jordimartorell
opened
6 years ago
5
mapToGenome drops probes "ilm10b4" annotation
#171
pfransquet
opened
6 years ago
7
getBeta from genomicmethylset
#170
yalejiang
opened
6 years ago
0
Problem with minfi using getAnnotation for IlluminaHumanMethylationEPICanno.ilm10b4.hg19
#169
pfransquet
closed
6 years ago
0
Add support for DelayedArray to blockFinder()
#168
PeteHaitch
opened
6 years ago
0
estimateCellType w/CordBlood
#167
kasperdanielhansen
opened
6 years ago
6
error in minfi dmpFinder
#166
JieqiongDai
opened
6 years ago
2
Quantile normalization after Noob
#165
DelnazR
closed
6 years ago
4
Object 'combine_dimnames' not found error when using getBeta()
#164
lardenoije
closed
6 years ago
2
Issue with dmpFinder
#163
ralowe
closed
6 years ago
5
Trouble with B4 manifest file EPIC
#162
RKLAUSH
closed
6 years ago
2
Add DelayedArray support for compartments() and createCorMatrix()
#161
PeteHaitch
closed
6 years ago
2
blockFinder() now supports DelayedArray-backed minfi objects with warning
#160
PeteHaitch
closed
6 years ago
1
cpgCollapse now supports DelayedArray-backed minfi objects
#159
PeteHaitch
closed
6 years ago
0
Fix qcReport() (closes #145)
#158
PeteHaitch
closed
6 years ago
0
Use DelayedMatrixStats everywhere
#157
PeteHaitch
closed
6 years ago
2
combineArrays() now supports DelayedArray-backed minfi objects
#156
PeteHaitch
closed
6 years ago
0
convertArray() now supports DelayedArray-backed minfi objects
#155
PeteHaitch
closed
6 years ago
0
Add option to realize following `convertArray()` and `combineArray()`
#154
PeteHaitch
opened
6 years ago
0
Switch from colMeans() to colMeans2() in preprocessNoob incurs numerical differences
#153
PeteHaitch
opened
6 years ago
1
Reduce example and test runtimes
#152
PeteHaitch
opened
6 years ago
0
Run vignette with DelayedArray-backed minfi objects
#151
PeteHaitch
opened
6 years ago
0
densityBeanPlot() feels slower when using DelayedArray-backed RGSet
#150
PeteHaitch
opened
6 years ago
0
Example in readGEORawFile is needlessly complicated
#149
PeteHaitch
opened
6 years ago
0
Functions that still need support for DelayedArray-backed minfi objects
#148
PeteHaitch
opened
6 years ago
0
Use of digest::digest() should check for required NAMESPACE?
#147
PeteHaitch
opened
6 years ago
1
Consolidate use of data.table::fread, read.table, etc.
#146
PeteHaitch
opened
6 years ago
0
qcReport() is broken
#145
PeteHaitch
closed
6 years ago
2
Reconcile use of cat/message/paste/sprintf/warning/stop
#144
PeteHaitch
opened
6 years ago
0
Make functions into formal S4 generics and methods?
#143
PeteHaitch
closed
6 years ago
3
More intuitive 'batch size' parameter
#142
PeteHaitch
opened
6 years ago
0
Closing sink
#141
PeteHaitch
opened
6 years ago
0
Specifying BACKEND
#140
PeteHaitch
opened
6 years ago
0
BiocParallel support
#139
PeteHaitch
opened
6 years ago
0
Update documentation to describe support for DelayedArray-backed minfi objects
#138
PeteHaitch
opened
6 years ago
0
Add preliminary support for DelayedArray-backed minfi objects
#137
PeteHaitch
closed
6 years ago
0
Fix addSex and plotSex
#136
markgene
closed
6 years ago
3
getSnpBeta returns different values for SNPs after combineArrays
#135
JennyvD
opened
6 years ago
5
bumphunter fwerArea clarification
#134
schiacchia
opened
6 years ago
0
RatioSet() documentation unclear / or issue with annotation name parsing
#133
RichardJActon
opened
6 years ago
0
Travis is hosed
#132
ttriche
opened
6 years ago
2
same issue with estimateCellCounts() again
#131
alexalah
opened
6 years ago
0
copy number typo
#130
ckmah
closed
6 years ago
0
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