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hansenlab
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minfi
Devel repository for minfi
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RGChannelSet change from eSet subclass to SummarizedExperiment subclass
#125
alanocallaghan
closed
6 years ago
3
If row name does not match, what should I do?
#124
zangcc0474
opened
6 years ago
2
Error in read.metharray.exp() function
#123
alna
closed
6 years ago
1
possible to export validationCellType()?
#122
ShanEllis
opened
6 years ago
0
Problem in constructing MethylSet object
#121
gerrywong
closed
6 years ago
3
estimateCellCounts() error (extended RGset file and EPIC array)
#120
ghost
opened
6 years ago
4
blockFinder
#119
Zitong-Li
opened
6 years ago
1
getGenomicRatioSetFromGEO() fails
#118
wvictor14
closed
6 years ago
2
manifest file update in minfiEPIC
#117
xcliu-oc
closed
6 years ago
12
API for read.*() functions
#116
PeteHaitch
opened
7 years ago
0
Initial, basic transition to DelayedMatrix
#115
PeteHaitch
closed
7 years ago
1
Problem with estimateCellCounts()
#114
stephaniehicks
opened
7 years ago
3
different results generated by function bumphunter() using matrix or GenomeRatioSet as input
#113
JieYang031
opened
7 years ago
2
Can't use preprocessRaw with rgSet
#112
JieYang031
closed
7 years ago
1
readGEORawFile broken
#111
hinri
closed
6 years ago
4
"minfi" loading problem because of couldn't "bumphunter" load
#110
jp089
opened
7 years ago
1
read.metharray with extended=TRUE is broken
#109
kasperdanielhansen
closed
7 years ago
2
replacement using pData() broken
#108
kasperdanielhansen
opened
7 years ago
6
markers removed from EPIC DMAP files causing fewer CpGs in idat files and minfi errors
#107
ekarlins
closed
7 years ago
6
Fixed .normalizeMatrix when two quantiles are identical
#106
Jfortin1
closed
7 years ago
1
Handling annotation:Unknown
#105
kasperdanielhansen
closed
7 years ago
1
RGChannelSetExtended -> RGChannelSet for estimateCellCounts
#104
Jfortin1
closed
7 years ago
0
Added the coerce method
#103
Jfortin1
closed
7 years ago
0
mapToGenome for the EPIC data
#102
hcli0325
closed
7 years ago
2
Fixed DataFrame bug and colnames(rgset)
#101
Jfortin1
closed
7 years ago
2
Can I use RGChannelsetExtended for estimatecellcounts function?
#100
shantelw
closed
7 years ago
6
Issues with estimateCellCounts
#99
sirselim
closed
7 years ago
2
Updates to gaphunter and estimateCellCounts citations
#98
sandrews5
closed
7 years ago
1
minfi data load problem
#97
chmcxz
closed
7 years ago
7
tcgaPipeline
#96
ttriche
opened
7 years ago
8
getSnpBeta on combined array
#95
wac
closed
7 years ago
4
FlowSorted.Blood.EPIC install?
#94
pc2001
closed
7 years ago
1
getMeth(MethylSet) => Error
#93
NizarTouleimat
closed
7 years ago
3
readmetharray force=TRUE
#92
mwsill
closed
7 years ago
6
updateObject RGChannelSetExtended
#91
kkleinoros
closed
7 years ago
1
controlStripPlot: bug when only one control sample
#90
lcougnaud
closed
7 years ago
2
argument to 'which' is not logical
#89
b8307038
closed
7 years ago
0
Error in readGEORawFile
#88
Baiwen224
closed
6 years ago
5
Error in estimateCellCounts
#87
MeganBreitbach
closed
7 years ago
5
getLocations() assumes the annotation package is on the search path
#86
mtmorgan
opened
7 years ago
0
Error in convertArray: all(probes1$ProbeSeqA == probes2$ProbeSeqB) is not TRUE
#85
ekarlins
closed
7 years ago
4
"subsetByLoci" and "preprocessIllumina" can not work together
#84
TracyHIT
closed
7 years ago
6
Added "..." argument for getBeta
#83
Jfortin1
closed
7 years ago
0
getBeta of RGChannelSet
#82
Rory-R-Wilson
closed
7 years ago
2
Memory issue in estimateCellCounts() when dealing with large data
#81
YinanZheng
closed
7 years ago
1
Error in controlStripPlot()
#80
wudustan
closed
7 years ago
3
Deleted a line for consistency with new combine()
#79
Jfortin1
closed
7 years ago
0
estimateCellCounts() not working
#78
MeganBreitbach
closed
7 years ago
18
Update convertArray.Rd
#77
Jfortin1
closed
7 years ago
0
Update combineArrays.Rd
#76
Jfortin1
closed
7 years ago
0
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