issues
search
hansenlab
/
minfi
Devel repository for minfi
58
stars
70
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Deleted a line for consistency with new combine()
#79
Jfortin1
closed
8 years ago
0
estimateCellCounts() not working
#78
MeganBreitbach
closed
8 years ago
18
Update convertArray.Rd
#77
Jfortin1
closed
8 years ago
0
Update combineArrays.Rd
#76
Jfortin1
closed
8 years ago
0
document ssNoob and make it the default
#75
ttriche
closed
8 years ago
0
Added robust combineArrays() function
#74
Jfortin1
closed
8 years ago
0
Finalized code for combineArrays()
#73
Jfortin1
closed
8 years ago
0
Added generics for convertArray, combineArrays
#72
Jfortin1
closed
8 years ago
0
Added new functions
#71
Jfortin1
closed
8 years ago
0
estimateCellCounts with EPIC array
#70
YinanZheng
closed
8 years ago
9
Changed Bis1 addresses for EPIC
#69
Jfortin1
closed
8 years ago
0
Made .buildControlMatrix450k robust to array
#68
Jfortin1
closed
8 years ago
0
bad dmap causing problems
#67
will-NYGC
closed
7 years ago
6
Cell proportions in estimateCellCounts()
#66
albertod34
opened
8 years ago
2
adding single-sample normalization (noob with recriprocation) for 27k/450k/EPIC merging
#65
ttriche
closed
8 years ago
1
Adapted preprocessIllumina to 27k array
#64
Jfortin1
closed
8 years ago
0
Turned off stratification for 27k array.
#63
Jfortin1
closed
8 years ago
0
Fixed background correction for 27k. Part1
#62
Jfortin1
closed
8 years ago
0
Added default annotation variable for 27k
#61
Jfortin1
closed
8 years ago
0
Added annotation for 27k
#60
Jfortin1
closed
8 years ago
0
Finishing adding stuff to subset RGChannelSet
#59
Jfortin1
closed
8 years ago
2
Added necessary functions to subset RGChannelSet.
#58
Jfortin1
closed
8 years ago
1
add keepCN argument to preprocessFunnorm
#57
mvaniterson
closed
7 years ago
2
parallel parsing
#56
kasperdanielhansen
opened
8 years ago
1
Support probe removal better
#55
kasperdanielhansen
opened
8 years ago
5
expose the PCs from preprocessFunnorm
#54
kasperdanielhansen
opened
8 years ago
1
Support gzipped files
#53
kasperdanielhansen
closed
7 years ago
2
Store call in preprocessMethod
#52
kasperdanielhansen
opened
8 years ago
0
bug(s) in preprocessMethod
#51
kasperdanielhansen
closed
8 years ago
1
Fixed funnorm to handle ties in the quantiles
#50
Jfortin1
closed
8 years ago
0
Regularization of the quantile functions
#49
Jfortin1
closed
8 years ago
3
Now make negative quantiles to be equal to 0
#48
Jfortin1
closed
8 years ago
1
Adding getControls to rgset
#47
RaphaelRaphael
closed
8 years ago
2
Bug in getControlTypes
#46
RaphaelRaphael
closed
8 years ago
1
Changes to estimateCellCounts
#45
sandrews5
closed
8 years ago
4
Fixed funnorm for EPIC array
#44
Jfortin1
closed
8 years ago
0
Reading 850K
#43
RaphaelRaphael
closed
8 years ago
4
Update minfi.Rnw
#42
RaphaelRaphael
closed
8 years ago
0
Updates to gaphunter
#41
sandrews5
closed
8 years ago
0
could not find function "assayDataValidMembers"
#40
cgeisenberger
closed
8 years ago
2
getMeth() conflicts with bsseq::getMeth() when both are loaded
#39
kasperdanielhansen
opened
8 years ago
0
Using getControlTypes() gives an error
#38
lckarssen
closed
8 years ago
4
Added drop=FALSE to handle n_sample=1
#37
Jfortin1
closed
8 years ago
0
Added drop=FALSE for .extractedFromRgSet450k function
#36
Jfortin1
closed
8 years ago
0
Added drop=FALSE to preprocessNoob since failing for rgset with n=1
#35
Jfortin1
closed
8 years ago
0
SUGGESTION: More efficient code using matrixStats (>= 0.50.0)
#34
HenrikBengtsson
closed
8 years ago
1
implement getNBeads
#33
kasperdanielhansen
closed
7 years ago
1
sex argument in preprocessFunnorm
#32
kasperdanielhansen
opened
8 years ago
0
Issues with estimateCellCounts
#31
YiLIU001
opened
8 years ago
2
Noob + Quantile Bug
#30
AndrewSkelton
opened
9 years ago
1
Previous
Next