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Not withstanding various bugs that have been fixed (including some security ones), there are tangible speed benefits when coupled with a multi-threading tweak.
Right now, if I run STAR on a very no…
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Hitting an error in the samtools rule stage. See below for full log file starting at rule samtools:
```Job 2: [INFO] installing samtools.
Cloning into 'samtools'...
remote: Counting objects: …
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Hi,
I'm attempting to package bedtorch for GNU Guix, the reproducible package manager. Unfortunately, it seems that there's an undeclared variable when building with rhtslib 1.22.0:
```
* inst…
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Hi @mpinese and @brentp,
upon first attempt using a linux distribution the executable seems not to be finding the libhts.so that is installed at `/usr/local/lib` in my system. My steps were:
in…
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I followed the installation instructions. But it gives me the error:
~/anaconda3/bin/x86_64-conda-linux-gnu-c++ -Wl,--rpath=~/download/RAfilter/src/htslib/ -L htslib/ -lhts -I htslib/htslib/ -lpthre…
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```
> make
mpicc -c -Wall -g -DHTSLIB -I/home/demis001/include:/home/demis001/bin/htslib-1.10.2/include:/home/demis001/bin/samtools-1.10 aux.c -o aux.o
aux.c: In function ‘sam_popen’:
aux.c:230:9…
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The human reference genome ("fasta" filetype) and next generation sequencing datasets ('fastq' filetype) might provide interesting additions to the benchmark. Currently the state of the art is zlib (…
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Hi,
I am getting constant error during the installation of speedseq. I have git cloned the speedseq and tried the make command after installing all the dependencie
`git clone --recursive https://g…
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I just now finally managed to get a build of Trinity 2.13.2 on a CentOS 7 machine with gcc-10.3.0 and pkgsrc-2021Q3 and some custom builds for the dependencies.
The final stumbling block was strang…
drhpc updated
2 years ago
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Dear developers,
I successfully compiled augustus but failed to compile auxprogs. please check the error message. Thanks
`make auxprogs -j 12`
`make[2]: Leaving directory '/home/data/t190303…