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Hi,
I have zero-inflated RNA Seq count data and performing simultaneous shrinkage using ShrinkSeq() with a fix parameter and zero-inflated negative binomial. All other parameters are have default …
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Hello,
I'm trying to use inlasloo for my INLA model but get the error above. In your example with the meuse dataset I see you call the intercept "y.intercept". I call mine "Intercept".
Is that…
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While package `gdistance` works well enough for most purposes, for really large datasets it may be more efficient to wrap up the `geodesic` C++ library by [Danil Kirsanov](https://github.com/jabooth/e…
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Through a simple linear model adjusted to the trajectories, we can infer the tendency of the epidemic curve, to do so we can construct functions that take the posteriors output from the main function …
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In Pumas we can do marginal MCMC where we only sample from the marginal posterior of the population parameters marginalizing out the subject specific parameters using LaplaceI or FOCE.
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in case study `knitr/car-iar-poisson` there are scripts for fit the BYM2 model using CmdStanR.
write a Jupyter notebook (preferably co-lab) that works with CmdStanPy and plotnine and all the spatial …
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Dear Finn, we are currently trying to fit a separable spatio-temporal model which includes a grouping variable (id cell) within the temporal model (hour) specification. The main problem is that the am…
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Series on constructing a valid sampler:
- Requirement for detailed balance
- Requirement for time reversibility
- Proving that HMC targets the posterior
- Proving that NUTS targets the posterior…
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- [ ] Axis titles
- [ ] Tick labels i.e. 1:250 is not useful. Cut down to 10 max.
- [ ] Understand what the fitted values and linear predictor plots actually are. Then make funciton names and docs f…
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A user requests support for https://github.com/daijiang/phyr, developed by @daijiang
**Perspective for this request:** It seems that phyr is implementing a simulate function quite similar to lme4, …