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PumasAI-Labs
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Bayesian-Benchmarks
Code for the Pumas Bayesian Benchmarks Paper
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Benchmarking Bayesian Inference in Pumas
#110
andreasnoack
opened
6 months ago
1
NONMEM: adds model files from runs 1 to 10
#109
storopoli
closed
9 months ago
0
NONMEM: no more `AUTO=1`
#108
storopoli
closed
2 months ago
0
fix: NONMEM Sigma Values
#107
storopoli
opened
11 months ago
0
fix: NONMEM's omegas
#106
storopoli
closed
11 months ago
0
fix: NONMEM Omega Values
#105
storopoli
closed
11 months ago
0
Results Poster
#104
storopoli
closed
11 months ago
0
Pumas results
#103
storopoli
closed
11 months ago
0
feat: use Rhat to compare within/across software implementation
#102
storopoli
opened
12 months ago
0
fix(Pumas): Pre-compile models before fitting
#101
storopoli
closed
11 months ago
0
Pumas 2.5 updates
#100
mohamed82008
closed
1 year ago
1
Stan results
#99
storopoli
closed
12 months ago
0
Use analytical models
#98
devmotion
closed
1 year ago
7
Optimizations of `MvNormal` and linear dynamics
#97
devmotion
closed
1 year ago
4
tbb::task to appease gcc13
#96
chriselrod
closed
1 year ago
2
depot-1cmt-mm NONMEM
#95
PavanVaddady
closed
9 months ago
0
Write NONMEM for JSON inits
#94
storopoli
closed
1 year ago
1
Convert all models to exponential
#93
storopoli
closed
1 year ago
2
Cd/change to exponential error
#92
cbdavis33
closed
1 year ago
0
Friberg results
#91
storopoli
closed
9 months ago
0
Fix the real Friberg
#90
storopoli
closed
1 year ago
0
Friberg (Pumas) - Removed abs from ODE
#89
storopoli
closed
1 year ago
0
Cd/write stan to fit 5 times
#88
cbdavis33
closed
1 year ago
0
updates for Pumas 2.4
#87
mohamed82008
closed
1 year ago
0
NONMEM updated 02 results
#86
storopoli
closed
1 year ago
0
Run benchmarks multiple times
#85
storopoli
closed
11 months ago
0
NONMEM - use the `.json` inits
#84
storopoli
closed
1 year ago
0
Cd/stan no threading
#83
cbdavis33
closed
1 year ago
2
Friberg NONMEM Model error
#82
storopoli
closed
1 year ago
0
nonmem parallel chains
#81
storopoli
closed
1 year ago
0
mm - some typo fix in Pumas
#80
storopoli
closed
1 year ago
0
NONMEM - fix omega mat inits
#79
storopoli
closed
1 year ago
0
Add NONMEM chain parallelization using `furrr::future_walk`
#78
storopoli
closed
1 year ago
0
Fix NONMEM Non-Diagonal OMEGA Initial Values
#77
storopoli
closed
1 year ago
0
Run Benchmarks Single-Threaded
#76
storopoli
opened
1 year ago
11
Remove old nonmem config in `.mod`
#75
storopoli
closed
1 year ago
0
Pumas results without Censored
#74
mohamed82008
closed
1 year ago
0
Pumas model fixes and benchmark results
#73
mohamed82008
closed
1 year ago
0
fix chain calculations
#72
storopoli
closed
1 year ago
0
fix nonmem again
#71
storopoli
closed
1 year ago
2
Write inits to json files
#70
cbdavis33
closed
1 year ago
5
Results 32 vCPUs
#69
storopoli
closed
1 year ago
0
Bench 32vcpus
#68
storopoli
closed
1 year ago
2
Run Pumas with max_chunk_size = 16
#67
mohamed82008
closed
1 year ago
1
try NUTS_TEST = 1 (Stan's NUTS) instead of the default NUTS_TEST = 0 (Hoffman and Gelman NUTS) in NONMEM
#66
mohamed82008
closed
1 year ago
1
try NONMEM diagonal mass matrix - default is block diagonal
#65
mohamed82008
closed
1 year ago
1
pumas benchmarks
#64
storopoli
closed
1 year ago
0
NONMEM v32 fits
#63
storopoli
closed
1 year ago
0
Run Benchmarks in `Pumas#master`
#62
storopoli
closed
1 year ago
0
NONMEM ESS should be in the non-log scale
#61
storopoli
closed
1 year ago
0
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