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I'm attaching some sentences where REACH is extracting that "X regulates/phosphorylates/etc EGF", where EGF (epidermal growth factor) is incorrectly identified as the object of the relation.
This m…
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It looks like somehow the expression data got split up from the `gh_pages` branch, because the file that `gen-html-plasmids-addgene_hip_sgc.py` refers to---`../expression-constructs/addgene_hip_sgc/re…
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Another idea is to buy a commercial S30-lysate kit to give this a spin on kinases before diving in to produce our own S30-lysate in large scale:
https://www.promega.com/products/protein-expression/pro…
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SH2 regions have distinct bnd nodes for each target if the anatomizer is not used.
Kinase regions have distinct mod nodes for each target, independently of anatomizer use.
Here is an example and som…
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Don't show 'regulates' children as suggestions in MF branch
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GO:0004647 phosphoserine phosphatase activity
I have one annotation to this, and the rest to the sibling
GO:0004722 protein serine/threonine phosphatase activity
(so it is the same as the serine …
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Current:
![Current](https://user-images.githubusercontent.com/26095787/78576899-4ec12980-77fb-11ea-856b-84a1fbf2ff28.png)
New:
![New](https://user-images.githubusercontent.com/26095787/78582176-e54…
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My docking experiments of OSM-S-106 vs all crystal structures of Plasmodium kinases supports PKA (protein kinase A) as the top target (PDB 5kbf).
OSM-S-106 was docked into the ligand binding site w…
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Thanks for your great work!
I had a question regarding updating the cellchat database. A lot of receptor ligands participate in multiple pathways. Specifically, Fos-Jun are activated by estrogen, p…
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hi there:
I got a erorr when I ran the script `build_ctat_lib.sh`, the error message is following:
* Running CMD: hmmscan --cpu 4 --domtblout PFAM.domtblout.dat ./source_download/PFAM.domtblou…