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clulab
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reach
Reach Biomedical Information Extraction
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Update badge protocol
#805
kwalcock
closed
4 months ago
0
Update key named entity resource files to latest state
#804
bgyori
closed
5 months ago
18
Add bioresources to build
#803
bgyori
closed
8 months ago
6
trying to integrate bionlp processors from reach in odinson
#802
Crispae
opened
9 months ago
5
Output format: `training-output` to build supervised models
#801
enoriega
opened
10 months ago
2
nxmlreader error
#800
HaomiaoLuoLlanio
closed
10 months ago
14
Docker build issue
#799
mjamei
closed
10 months ago
1
Update assembly conflict resolution
#798
kwalcock
closed
1 year ago
1
Compiler warnings
#797
kwalcock
opened
1 year ago
1
sbt compile
#796
HaomiaoLuoLlanio
closed
1 year ago
11
BioRules visualizer locally
#795
bgyori
closed
1 year ago
14
Mentions with duplicate IDs are removed upon deserialization
#794
kwalcock
opened
1 year ago
2
Update builds to use newer common and nxmlreader
#793
kwalcock
opened
1 year ago
1
Reach crashes on input of large nxml files with a stack overflow
#792
kwalcock
opened
1 year ago
0
Long antecedent chains will blow the stack
#791
kwalcock
opened
1 year ago
4
Large files break serial-json output
#790
kwalcock
opened
1 year ago
0
Serialize JSON in a way that doesn't require duplicate calculations of Document hashes
#789
kwalcock
opened
1 year ago
0
Use HashCode from processors
#788
kwalcock
opened
1 year ago
0
Mentions should be sorted before output
#787
kwalcock
opened
1 year ago
0
Speed up (and debug) serial json output
#786
kwalcock
closed
1 year ago
1
Triggers aren't converted to Bio- or Coref-Mentions and don't survive serialization
#785
kwalcock
opened
1 year ago
2
Failing test is not actually tested
#784
kwalcock
opened
1 year ago
1
RunReachCLI gets stuck with specific nxml files
#783
guerrerosimonl
opened
1 year ago
6
Let BioNLPTokenizerPostProcessor mutant detection match Reach rules #49
#782
kwalcock
opened
1 year ago
0
BioNLPProcessor.annotate fails when withRuleNER is set to false
#781
kwalcock
opened
1 year ago
1
Update processors
#780
kwalcock
closed
1 year ago
1
Why is testing done with a script?
#779
kwalcock
opened
1 year ago
2
Change to clulab dependency
#778
kwalcock
closed
1 year ago
3
This is another way to add section names without changes to processors
#777
kwalcock
closed
1 year ago
2
This is one way to add section names without changes to processors
#776
kwalcock
closed
1 year ago
8
Added support to extract section names
#775
enoriega
closed
1 year ago
8
Error installing REACH with sbt.
#774
Crispae
closed
1 year ago
12
Installation Error When Attempting to make REACH Jar
#773
compbiolover
closed
1 year ago
3
Modernize, i.e., update to processors using Stanford CoreNLP 4.4.0
#772
kwalcock
opened
2 years ago
7
Wrong field in PubmedAbstractIndexer
#771
kwalcock
opened
2 years ago
1
Change to runMain
#770
bgyori
closed
2 years ago
1
Improved ahead-of-time annotator `AnnotationsCLI`
#769
enoriega
closed
2 years ago
12
Update bioresources documentation and remove deprecated files
#768
bgyori
closed
2 years ago
12
Add citations
#767
kwalcock
closed
2 years ago
2
Differences in processing between Arizona/Odinweb and local installation
#766
zebulon2
closed
2 years ago
2
API key for Elsevier
#765
kingfish777
closed
2 years ago
2
[WIP] Add FMA and Radlex ontologies
#764
alfredomp
closed
2 years ago
1
Updated Lucene Indexers
#763
enoriega
closed
2 years ago
2
Update logging
#762
kwalcock
closed
2 years ago
0
Update Docker build
#761
bgyori
closed
2 years ago
1
Fix access to bioresources from jar
#760
kwalcock
closed
2 years ago
5
Problem with resource files in fat jar
#759
bgyori
closed
2 years ago
6
Difficulty installing reach through sbt
#758
djinnome
opened
3 years ago
16
Context metadata in FRIES output
#757
enoriega
closed
3 years ago
5
Remove superfluous .par
#756
kwalcock
closed
3 years ago
3
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