-
**Describe the bug**
Currently, the [addClusters](https://www.archrproject.com/reference/addClusters.html) parameter 'method' which can be specified as Seurat or Scran, is the same parameter name as …
-
Hello,
I'am trying to use the package on a big network (around 170000 nodes).
However, when I call the contractor:
# defining the constructor externally
`directed_constructor = constructors.lo…
-
For some time noe, the function I was using for tracking evolving communities was causing crashes. This was due to incorrectly generated community membership IDs, which caused the disconnected communi…
-
When I run gene module analysis on my data, I get gene modules with highly uniform expression score values throughout UMAP space and only non-zero expression (see photos). So does another colleague in…
-
Hi!
I wanted to use SpeakEasy2 to reproduce the results from a paper but it is unclear to me how I can access the final cluster membership after the clustering is done.
Any help will be much appr…
-
Hello all,
I am trying to run the following lines
cds
-
Dear all,
When generating graph genome according to the pipeline https://github.com/pangenome/HPRCy1, I found that some long assembled contigs (generated using hifisam) can not be aligned to the re…
-
### What is your question?
Hello @benfred @akasper @mattf,
I am trying to run leiden clustering on ~40 M cells. During the run I see the GPU is idle in terms of power usage and is forever to per…
-
@BradBalderson Congratulation to this package. I think this is a very much needed tool for the sc community.
I can confirm that it scales much better to large dataset than scSHC. And the visualizati…
-
I don't think we really want to use cell sets as the primary way to change cell coloring. Document why.