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Good morning,
Masurca has generated the following pair of errors. I was wondering if they are related?
First,
```
[Tue Jul 3 18:41:15 EDT 2018] Processing pe library reads
[Tue Jul 3 19:19:34 E…
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Hi,
I was running an assembly with ONT and illumina data but it failed:
[Mon May 25 18:07:54 MDT 2020] Refining alignments
Warning: unable to close filehandle properly: Input/output error, lin…
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Hi
Thank you for developing masurca..
Is there any way to direct the output of chromosome scaffolder tool to a directory?
Currently, the output is written to files in the working directory but I …
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swig/perl5/swig_wrap.cpp:341:20: fatal error: string.h: No such file or directory
#include
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Estimate ploidy wrongly ! I expected it to be 2 ...
```
➜ MASURCA_all ./assemble.sh
[Fr Okt 19 15:27:18 CEST 2018] Processing pe library reads
[Fr Okt 19 15:38:33 CEST 2018] Average PE read lengt…
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**I'm just wondering about expected or acceptable overall alignment rates with HISAT2. I have a chromosome level plant assembly (~600 Mb and identified ~92% BUSCOs) and 3 biological replicates for RNA…
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home@home-Lenovo-H30-50:~/Documents/Chloroplast_Assembly/MaSuRCA-3.2.7$ sudo ./install.sh
+ pwd
+ ROOT=/home/Documents/Chloroplast_Assembly/MaSuRCA-3.2.7
+ [ -z ]
+ DEST=/home/Documents/Chlo…
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MaSuRCA 2.3.1 running on Ubuntu 14.04 LTS produces work1 directory and super1.err output file, then reports "Refining alignments". The next output is "ERROR: Could not parse delta file, /dev/stdin", f…
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CXXLD prepro
CXXLD show-coords
CXXLD show-diff
CXXLD repeat-match
CXXLD mgaps
CXXLD delta-filter
CXXLD postnuc
swig/perl5/swig_wrap.cpp:322:20: fatal error: s…
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`brew install` fails:
(The list is based on the high priority list)
- [x] delly (https://github.com/Homebrew/homebrew-science/pull/5412)
- [ ] discovardenovo (https://github.com/bcgsc/orca/issues/1…