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DaehwanKimLab
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hisat2
Graph-based alignment (Hierarchical Graph FM index)
GNU General Public License v3.0
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mkfifo failed error and change $temp_dir
#434
pxchen110
opened
15 hours ago
0
Question about calculation of base counts in hisat3Ntable
#433
lansome2
opened
1 week ago
0
--directional-mapping-reverse vs. --rna-strandness on HISAT3N
#432
paurosales
opened
2 weeks ago
0
(ERR): "ref.genome" does not exist Exiting now ...
#431
Anees-caas
opened
3 weeks ago
0
Mapping using different parameters --very-sensitive and default
#430
AllanOkwaro
opened
1 month ago
0
Issue with hisatgenotype
#429
Januaryyiyue
opened
2 months ago
1
[Future request] hisat-3n table option to report conversions summarized to genomic feature or reads counts
#428
paurosales
opened
2 months ago
0
hisat2-build failed for Segmentation fault
#427
yqlan
opened
3 months ago
0
hisat2-build index for circRNA-seq
#426
fengweimin-maker
opened
3 months ago
0
Hisat-3N mapping quality
#425
ZiggeyQi
opened
3 months ago
0
hisat2 location does not exist
#424
Thanatia
opened
4 months ago
0
[Bug Report] hisat2-align exited with value 137, space complexity of hisat2
#423
bayegy
opened
6 months ago
0
ERR): "fastq file.fastq" does not exist. Exiting now ...
#422
big-boo1
opened
7 months ago
0
-np argument seemingly not working
#421
brian-odonovan
opened
7 months ago
0
Installation Issue Error 1 - make
#420
ntorres17
closed
8 months ago
1
Any plans to support Apple Silicon architecture?
#419
itslittman
opened
9 months ago
0
adding script to index latest human telomere-to-telomere genome provided at NCBI
#418
animesh
opened
11 months ago
0
A question about methylation information extraction
#417
kekaiko
closed
11 months ago
0
Please add the pbat option of hisat-3n
#416
kekaiko
opened
11 months ago
0
add native support for gzipped fastq files
#415
CJ-Chen
closed
11 months ago
1
Output files(.snp, .haplotype) of hisat2_extract_snps_haplotypes_*.py are empty
#414
jim83830
opened
11 months ago
0
hisat2 hangs aligning axolotl reads
#413
outpaddling
closed
1 year ago
1
Feature request: Add support for xz and zstd
#412
outpaddling
opened
1 year ago
0
Repeat mapping with different result
#411
xf78
opened
1 year ago
0
error minimum intron length with hisat2 v. 2.2.1
#410
ConcettaDe4
opened
1 year ago
0
Align ATAC-seq with Hisat2?
#409
yjiang296
opened
1 year ago
0
Add CI for Linux aarch64
#408
martin-g
opened
1 year ago
0
Add Github Actions based CI for Linux x86_64
#407
martin-g
opened
1 year ago
3
Make hisat2 compilable with Visual Studio 2019
#406
teepean
opened
1 year ago
0
Hisat2 [Errno 2] No such file or directory
#405
mmtohm
closed
1 year ago
0
"Local Graph Exploded" warning for hisat2 build using --snp,--haplotype,--exon and --ss.
#404
SJJHK
opened
1 year ago
0
building standard hisat-3n indices with --base-change but not --repeat-index
#403
connertraugot
closed
1 year ago
4
hisat2-build DOES NOT work for me!
#402
zerolinuxbio
opened
1 year ago
1
Question regarding the runtime for hisat-3n-table
#401
cahn20
opened
1 year ago
0
mapped read length
#400
wangjiawen2013
opened
1 year ago
0
*** Error in `hisat2-build': double free or corruption (!prev): 0x00002b5724374370 ***
#399
rvarki
closed
1 year ago
1
Forcing alignment only to the forward reference for HISAT-3N
#398
cahn20
opened
1 year ago
1
Could not locate a HISAT2 index
#397
hasanalanya
closed
1 year ago
2
(ERR): hisat2-align died with signal 6 (ABRT) (core dumped)
#396
dianzhiyong
opened
1 year ago
3
Any plans for supporting mac arm architecture?
#395
genzorp
opened
1 year ago
0
Issue with aligning with hisat2
#394
alok1922
opened
1 year ago
0
directional-mapping mode is not consistent is flag and YZ tag.
#393
y9c
opened
1 year ago
0
`hisat-3n-table` can not parse base quality correctly
#392
y9c
closed
1 year ago
1
Genome Indexing - Encountered internal HISAT2 exception (#1)
#391
CesarBertinetti
closed
1 year ago
2
hisat2 command error
#390
rrss23
opened
1 year ago
0
update hisat-3n docs
#389
imzhangyun
opened
1 year ago
0
Hisat 3n dev directional mapping reverse
#388
imzhangyun
closed
1 year ago
0
Bam output?
#387
JunxiFeng
opened
1 year ago
0
libc++abi: terminating in hisat-3n-table
#386
hwlim
opened
1 year ago
5
kill any open forks in Fail() before dying
#385
wholtz
opened
1 year ago
0
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