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The BiGG Recon3D model has
Metabolites | 5835
Reactions | 10600
Genes | 2248
whereas the paper reported:
> 3,288 open reading frames (representing 17% of functionally annotated human genes)…
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### Description of the issue:
According to memote report, stoichiometric concistency is one of the lowest scores of the model, and thus one obvious task for further improvement. This inconcistency is…
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Dear all,
I used ReDU for the first time.
It would be great if you could add TripleTOF6600 from Sciex to your drop-down menue.
We used methanol-water (8:2) which was also not in the list.
…
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Hi , I am reading and running the codes of your article. But I have a question, for example, from a generic model like Human_1_17.mat, how did you make tissue-specific models like blood, kidney, hear…
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when I call `r.getFullStoichiometryMatrix()`, the order of the metabolites changes depending on whether the method is called in a class or in a Jupyter notebook. From what I can tell, the order of the…
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_From @dosumis on February 9, 2017 16:12_
Intention is to distinguish catalytic processes acting on an 'information biomacromolecule' (CHEBI:33695) from those acting on other molecules. We can't do …
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The Pathway diagram (on the server at least) is not highlighting the metabolites found in the Reactome data :(
This is also an untrue statement from the top of the page that needs changed:
I…
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# Description of the issue
Some metabolites have a weird formula:
- rdxo -> Fe1S0
- rdxr -> Fe1S0
- rbrdxOX -> UK
- rbrdxRD -> UK
UK means maybe unknown ?
Fe1S0 look…
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# Description of the issue
I believe the HMDB ID for this metabolite should be HMDB00124 (http://www.hmdb.ca/metabolites/HMDB0000124). The current one, HMDB03971, maps to Beta-D-Fructose 6-phosphate.…
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Latest GPML for [pathwayPA145011112](https://www.pharmgkb.org/pathway/PA145011112) is obsolete.
Use this instead: [PA145011112-new.gpml](https://drive.google.com/a/pharmgkb.org/uc?export=download&id=1…