sys-bio roadrunner issues

sys-bio / roadrunner

libRoadRunner: A high-performance SBML simulator

http://libroadrunner.org/

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issues

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Manylinux2014 is replaced with Manylinux_2_28 in C/CD workflow

#1230 adelhpour opened 21 hours ago
0
The issue with getting different results on mac m1s is fixed

#1229 adelhpour opened 4 days ago
0
Remove Azure in favor of github actions.

#1228 luciansmith closed 1 week ago
0
GitHub hosted macOS x86_64 is updated to macOS12

#1227 adelhpour closed 1 week ago
0
M1 issue with steadystate

#1226 luciansmith opened 2 weeks ago
2
Running into memory issues when simulating many models with with different initial conditions

#1225 dalbabur opened 1 month ago
9
Changes test Set_Gillespie_Random_Seed to fail less.

#1224 luciansmith closed 1 month ago
0
Only mangle the os and compiler names once, and save.

#1223 luciansmith closed 1 month ago
0
Not possible to create many roadrunner instances

#1222 matthiaskoenig opened 1 month ago
1
Update workflow; python in particular

#1221 luciansmith closed 1 month ago
0
libroadrunner 2.7.0 python package not available for Mac OS with 22.5.0 Darwin Kernel

#1220 matthiaskoenig closed 1 month ago
4
Test updating github actions

#1219 luciansmith closed 1 month ago
0
CI/CD workflow using GitHub Actions is added.

#1218 adelhpour closed 1 month ago
1
Release 2.7.0

#1217 luciansmith closed 2 months ago
0
Update sundials to version 7.0

#1216 matthiaskoenig opened 2 months ago
0
Change the default backend to LLJit.

#1215 luciansmith opened 2 months ago
1
Fix issue 1210

#1214 luciansmith closed 2 months ago
1
Fix for issue #1210

#1213 luciansmith closed 2 months ago
0
Add test for loading saved state from different session.

#1212 luciansmith closed 2 months ago
0
Simulations with negative start times handle math with csymbol `time` incorrectly

#1211 matthiaskoenig opened 2 months ago
3
Saving and loading state does not work across python interpreter sessions

#1210 matthiaskoenig closed 2 months ago
4
Update docs for gh-pages.

#1209 luciansmith closed 3 months ago
0
Add some documentation for the GetPiecewiseTriggersCodeGen class.

#1208 luciansmith closed 3 months ago
1
Fix typos in README.md

#1207 luciansmith closed 3 months ago
1
Fix minor typos in `README.md`

#1206 BenjaminRodenberg closed 3 months ago
1
addX functions not wrapped well in Python

#1205 luciansmith opened 3 months ago
0
Update docs.

#1204 luciansmith closed 3 months ago
0
New release!

#1203 luciansmith closed 3 months ago
0
Numpy ints return false from PyInt_Check but not PyArray_IsIntegerScalar

#1202 luciansmith closed 3 months ago
0
Azure keeps stopping after an hour on manylinux; fix.

#1201 luciansmith closed 3 months ago
0
Allow repeated times in output simulation vector.

#1200 luciansmith closed 3 months ago
0
Fix issue where large values were always being rejected.

#1199 luciansmith closed 3 months ago
0
Update docs for setValue/setValues

#1198 luciansmith closed 3 months ago
0
Fix doc building so python-only functions make it to the docs

#1197 luciansmith opened 3 months ago
0
Let SetValues() take dict argument in Python.

#1196 luciansmith closed 3 months ago
0
removeInitialAssignment results in many variables changing

#1195 dalbabur opened 3 months ago
3
Delete the build directory, not the dist directory.

#1194 luciansmith closed 3 months ago
0
Changing initial values should change SBML export

#1193 luciansmith opened 4 months ago
0
Create directory first.

#1192 luciansmith closed 4 months ago
0
Move final artifacts; don't copy them.

#1191 luciansmith closed 4 months ago
0
Prep for automatic building on M1.

#1190 luciansmith closed 4 months ago
0
Missing initial assignments after loading model

#1189 dalbabur closed 4 months ago
8
Make the manylinux build even smaller?

#1188 luciansmith closed 4 months ago
0
Implement the rateOf construct.

#1187 luciansmith closed 4 months ago
1
If conserved moieties are set, we don't auto-set them in a steady state analysis.

#1186 luciansmith opened 4 months ago
0
Random seed of the ExecutableModel can now be set through API functions (With rebasing the develop branch)

#1185 adelhpour closed 3 months ago
0
Random seed of the ExecutableModel can now be set through API functions

#1184 adelhpour closed 5 months ago
1
Segmentation Fault error when running in cluster

#1183 dalbabur opened 5 months ago
2
Update version number to 2.6.0

#1182 luciansmith closed 5 months ago
0
Add documentation string to the 'setValues' python command.

#1181 luciansmith closed 5 months ago
0