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Hi all,
I'm making heat tree matrices for ITS and 16S sequencing data. I like the matrix that was built for the ITS data but when using the same exact parameters for the 16S data, I get trees that…
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Based on my current workflow, I'm generating a taxmap object with metacoder. And then I'm plotting the tree like this:
```r
# Phyloseq...
# Data manipulation....
# Data manipulation....
# Metaco…
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Hi there!
I was wondering, is there a way to export the stats generated from the heat trees?
Based on your tutorial we can get the p-values for the heat tree using:
```
obj$data$diff_table$wil…
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Instead of:
```r
compare_groups(obj, dataset = "tax_abund",
cols = hmp_samples$sample_id,
groups = paste(hmp_samples$sex, hmp_samples$body_site))
```
allow
`…
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Hey there..
Thanks the nice tool. Is there a way to run the final matrix in a parallel or multi-threaded manner. I have the following with a lot of rows (~ **1,248,624**):
```
> print(obj$data$d…
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Hi @sckott, you asked for my thoughts on binomen on issue #9 and I thought a new issue might be a better place to respond.
I like the package overall. It has a clean and straight forward style that …
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Hi all,
I'm attempting to install MicrobiomeR on R Studio Server Pro. It's a cloud based GUI of Rstudio. I'm getting stuck on this error, that I haven't been able to troubleshoot successfu…
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Hi,
I was wandering if it is possible to visualize the results of my generalized linear model analysis using the heat_tree function.
Specifically I have an otu table (species vs samples) and b…
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Submitting Author Name: Eunseop Kim
Submitting Author Github Handle: @markean
Repository: https://github.com/markean/melt
Submission type: Pre-submission
Language: en
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(Copied from s…