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grunwaldlab
/
metacoder
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
http://grunwaldlab.github.io/metacoder_documentation
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Another Error in running alpha diversity analysis
#363
mcddna
closed
3 months ago
1
Error in layout$fun(graph = list(1598, TRUE, c(0, 0, 0, 0, 0, 0, 0, 0, : At rinterface_extra.c:82 : The value 10.642051692927977 is not representable as an integer. Invalid value
#362
dhadsell
opened
5 months ago
7
Error: 'filter_taxa' is not an exported object from 'namespace:taxa'
#361
dhadsell
closed
5 months ago
4
Problem with own dataset
#360
lfenske-93
closed
7 months ago
6
Phyloseq heat tree doesn't see taxon_id or supertaxon_id when trying filter_taxa?
#359
hank00000
opened
8 months ago
9
how to get access to the Taxmap dataframe ?
#358
mariabernard
opened
8 months ago
1
Relative abundance in heat tree
#357
SimonMorvan
opened
8 months ago
4
Getting incorrectly formated results with zero_low_counts
#356
dhadsell
opened
8 months ago
4
Run heat_tree with result of differential abundance analysis
#355
Paoluxxe
closed
6 months ago
9
Error in filter_taxa(x, per_taxon_max_change > 2.5, supertaxa = TRUE, : unused arguments
#354
Low-Maple
closed
8 months ago
3
Keep only differentially abundant taxa in heat_tree()
#353
SimonMorvan
closed
9 months ago
1
Help with metacoder: Displaying a simplified heat tree for four taxonomic levels
#352
Wengen-Zhu
closed
9 months ago
0
calc_diff_abund_deseq2, linear variables and "design"?
#351
msolbach
opened
11 months ago
3
Creation of different heat trees by treatments definded in sample data file
#350
kazpa-kay
opened
11 months ago
0
primersearch_raw swaps position of forward and reverse primers.
#349
omarkr8
closed
1 year ago
1
parse_phyloseq issues
#348
jmoscosonunez
closed
1 year ago
2
ggtext compatibility
#347
Gian77
opened
1 year ago
2
fixed bug in calc_diff_abund_deseq2
#346
ethanbass
closed
1 year ago
1
italicize node labels?
#345
taylorreiter
opened
1 year ago
2
Can we use a uniform color scale in different figs?
#344
durubing-jn
closed
1 year ago
2
as_phyloseq error
#343
DanielSoutoV
closed
1 year ago
5
Filter_taxa issue (No "taxon_id" column in the data set "3", so there are no taxon IDs)
#342
SimonMorvan
opened
1 year ago
1
Update parsers.R
#341
jotech
closed
1 year ago
1
Color nodes according to correlation between relative abundance and external variables
#340
jpcasasruiz
opened
2 years ago
5
This code crashes RStudio
#339
zachary-foster
closed
3 months ago
2
Error in repel_boxes(data_points = as.matrix(text_data[movable, c("x", : std::bad_alloc
#338
zachary-foster
opened
2 years ago
0
Fix typo: 'verison' => 'version'
#337
ctb
closed
2 years ago
1
Figure readability for publication?
#336
hbbshulman
opened
2 years ago
1
metacoder with MetagenomeSeq
#335
acpaulo
opened
2 years ago
5
Error with parse_tax_data and installation issues
#334
zachary-foster
opened
2 years ago
8
Failure when installing metacoder in RStudio in both windows and Ubuntu 20.04
#333
emankhalaf
opened
2 years ago
2
Confusion about filter_taxa and filter_obs
#332
levlitichev
opened
2 years ago
3
Update example data format
#331
zachary-foster
opened
2 years ago
0
Export p-values with heircachy amd taxanomic names?
#330
catherineel
opened
2 years ago
2
Alpha-diversity assessed by richness (Chao1, ACE)
#329
biosciences
opened
2 years ago
2
Error in grid.Call.graphics(C_setviewport, vp, TRUE) : non-finite location and/or size for viewport
#328
tboonf
closed
1 year ago
12
Adding Relative Abundance as node size and color
#327
DarynaP
closed
2 years ago
4
Error in names vector length using primersearch_raw
#326
rogmei
closed
2 years ago
3
deseq2 branch
#325
sghignone
closed
2 years ago
4
How to filter non-significant odd named taxa, and only keep the significant odd named taxa?
#324
catherineel
opened
2 years ago
8
Customize sample order heat_tree_matrix?
#323
LunavdL
opened
2 years ago
5
rarefy_obs seems to be removing all my samples?
#322
anonymouslichen
closed
2 years ago
1
Metabolic pathway packages/script recommendations
#321
catherineel
opened
2 years ago
4
How to filter taxa in heat tree matrix?
#320
catherineel
closed
2 years ago
1
Does removing low-abundance counts completely remove them from pairwise comparisons?
#319
catherineel
closed
2 years ago
5
The heat tree for common species
#318
biosciences
opened
2 years ago
1
The taxon list table for the differential heat tree
#317
biosciences
opened
2 years ago
6
Error for running alpha diversity analysis
#316
biosciences
closed
7 months ago
8
How to increase the text size for lineage names in heat_tree
#315
biosciences
opened
2 years ago
4
Error: could not find function "simplify" when I run metacoder::filter_taxa
#314
biosciences
opened
2 years ago
7
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