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Could we have a method for TreeSE objects that is analogous to `SEtools::mergeSEs` function (see [here](https://rdrr.io/github/plger/SEtools/man/mergeSEs.html))? The `SEtools::mergeSEs` does merge T…
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Need to update. Current text from 2012:
There will be four key output from the EMP:
1. Gene Atlas (GA) is a centralized repository and database for all information acquired during this study. This re…
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Hi there, when i use SMTa for microbe analysis in visium data, i noticed that the nt database is too large and time consuming.
![114027](https://github.com/affinis/SMTa/assets/36031820/17f79c24-88b0-…
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Hello!
While reading several papers about microbiome analysis, I have found a regular recommendation for normalization prior to analyses. But this sounds strange to me for alpha diversity, since es…
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First of all thank you for a very useful package!
It would be great if you can give some clarifications regarding the following error:
Error in linda: Error in fun(i): task 1 failed - "number of o…
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Hello,
I have been using your package CCMM for mediation analysis. I noticed a potential issue that may also apply to CMMB.
I posted about it in the CRAN page for CCMM: https://github.com/cran/…
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Hello,
I am a relatively new user of phyloseq, but it is a great program and has really helped out in our analyses. I am currently testing various methods for differential abundance analysis with o…
ghost updated
5 years ago
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Hey,
thought that I would open a new issue here to discuss what we should analyze. These are some of the things that I found. I'll look for more stuff, but this could serve as a beginning point for…
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Understanding how the human gut microbiota and host are affected by probiotic bacterial strains requires carefully controlled studies in humans and in mouse models of the gut ecosystem where potential…
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Dear All,
I am totally new to R programming that I know is very powerful tool for statistical analysis.
I am trying to transfer data from QIIME to R using Phyloseq for analysis. My data is paired-end…