cafferychen777 MicrobiomeStat issues

cafferychen777 / MicrobiomeStat

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

https://www.microbiomestat.wiki/

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issues

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! task 1 failed - "number of levels of each grouping factor must be < number of observations (problems: ID)"

#71 carolyndoty opened 1 week ago
1
!System command 'Rcmd.exe' failed

#70 chongchunwie opened 1 week ago
3
Error in generate_taxa_test_single/linda

#69 jrotzetter closed 1 week ago
2
Reference level for categorical variables

#68 pbaCamille closed 2 weeks ago
3
Request to understand the LMM models in alpha, beta diversity and Differencial abundance.

#67 OrsonMM opened 3 weeks ago
5
mStat_generate_report_long() : Error in update_data_obj_count()

#62 wode0000ai opened 3 months ago
4
Maintain Sample Order Consistency in mStat_aggregate_by_taxonomy() Output

#60 qqwxp opened 4 months ago
1
Weights for Samples of LinDA Modelling

#59 DarioS opened 4 months ago
2
error while running the generate_beta_trend_test_long function

#58 yejunbin opened 4 months ago
2
Create Graphs/Analyses without Performing Rarefaction

#57 pkirti33 opened 5 months ago
4
Feasibility of Interaction Specification Using generate_taxa_test Functions

#56 DarioS closed 5 months ago
1
Wiki Example Code Seems Outdated

#55 DarioS opened 5 months ago
3
LinDA Unusual p-value Distribution

#54 DarioS opened 5 months ago
2
Zero-handling Doesn't Work if a Sample is All Zero

#53 DarioS closed 5 months ago
5
`MicrobiomeStat::generate_beta_test_single` represents errors

#52 HuaZou opened 6 months ago
2
"$ operator is invalid for atomic vectors" when using mStat_import_biom_as_data_obj()

#51 pkirti33 closed 5 months ago
2
Parameter Names Incorrect in mStat_import_biom_as_data_obj

#50 pkirti33 closed 6 months ago
1
Error in midpoint(data.obj$tree) : could not find function "midpoint"

#49 nutrimol opened 6 months ago
2
mStat_generate_report_single(): error in linda() call

#48 SciLiciumTheo opened 6 months ago
1
mStat_generate_report_single() does not work with compositional data

#47 SciLiciumTheo closed 6 months ago
2
qiime2 style metadata import error

#46 magicprotoss opened 6 months ago
1
Datatype of feature.tab not matrix after normalization

#45 pkirti33 opened 7 months ago
10
generate_taxa_areaplot_long “No shared levels found between names(values)..."

#43 srosales712 closed 7 months ago
2
Error installing from github

#41 fredoowarren closed 8 months ago
2
Problems with MicrobiomeStat.rdb

#40 kuzmpa opened 8 months ago
4
Duplicate records used in the linear model within the "generate_beta_change_test_pair" function

#39 jstobo closed 8 months ago
4
All samples were excluded after subsetting data

#38 Bio2406839 closed 8 months ago
4
Error when running generate_beta_trend_test_long() function

#37 QGaelle opened 8 months ago
4
Level of factor missing in output generate_alpha_trend_test_long() function.

#36 QGaelle opened 8 months ago
3
Format time.var in generate_alpha_trend_test_long() function

#35 QGaelle opened 8 months ago
10
Could not find function "mStat_convert_phyloseq_to_data_obj"

#34 QGaelle opened 8 months ago
13
generate_taxa_test_pair() issue with time.var = NULL in random effect

#33 16svale opened 9 months ago
5
handling the false discovery rate ("fdr")

#32 16svale opened 9 months ago
1
Volcano overlapping labels_MicrobiomeStat_v1.1.3

#31 16svale closed 8 months ago
0
generate_alpha_trend_test_long giving fatal error, aborting R session

#30 aherms12 opened 9 months ago
6
Error "contrasts can be applied only to factors with 2 or more levels" while using generate_alpha_change_test_pair()

#29 BiggusDickus666 opened 9 months ago
2
Impossible to find the function "GUniFrac"

#28 ladrub closed 9 months ago
2
Error: number of observations (=44) <= number of random effects (=44) for term (1 + time | subject)

#26 AlexanderUm opened 10 months ago
8
microbiomestat ts.levels not plotting correctly in generate_taxa_areaplot_long

#24 carmennns2 opened 10 months ago
9
time.var = NULL, in mStat_generate_report_single () causes an error and stops rendering

#23 RachBioHaz opened 11 months ago
2
Cannot acces to data with generate_beta_ordination_pair object

#22 ladrub opened 11 months ago
4
GMPR transformation function is missing

#20 thecorz opened 11 months ago
1
generate_beta_ordination_single: meta_tab not found

#18 sdoms opened 1 year ago
1
generate_alpha_change_test_pair(): Error in `dplyr::group_by()`: ! Must group by variables found in `.data`. ✖ Column `time` is not found.

#17 qqwxp opened 1 year ago
7
strata.var in mStat_generate_report_long is not optional right now

#15 sdoms closed 1 year ago
2
generate_beta_pc_boxplot_long not plotting all paired lines

#13 kennyyeo13 closed 1 year ago
2
generate_beta_test_single(): Error in colnames<-(*tmp*, value = colnames(lhs)) : attempt to set 'colnames' on an object with less than two dimensions

#12 cami3 opened 1 year ago
10
generate_alpha_test_pair: Error in t(do.call(sparseMatrix, do.call(rbind, lapply(seq_along(blist), : invalid 'lazy' to R_sparse_transpose()

#11 kennyyeo13 closed 1 year ago
4
Unspecified dependency: ggsci

#10 SciLiciumTheo closed 1 year ago
2
generate_alpha_trend_test_long error(): error in vec_data() : ! x must be a vector, not a <sample_data> object.

#9 mariamaseng opened 1 year ago
3