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## Expected Behavior
Hello,
I am trying to run batch searches against ColabFoldDB on a SLURM cluster, following the [MSA instructions](https://github.com/sokrypton/ColabFold/tree/26de12d3afb5f85d49d…
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## Expected Behavior
easy-search should finish execution without errors
## Current Behavior
Error during pre-filter step
> Index table k-mer threshold: 0 at k-mer size 15
> Index table: …
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## Expected Behavior
Searching proteins against a database with similar and exact proteins (from bacterial refseq proteome) should return hits with similar and exact matches.
## Current Behavior
Ru…
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Hi,
I am using the recomputed_alignments_mmseqs.py to search for MSA for my input.fasta which has 9 sequences inside.
but the mmseq2 is taking too long to run it, it is already over 4 hours, but st…
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Hi
Thanks for the great contributions here.
I have a fasta file containing 36 sequences, I am trying to do the homology search against uniprot, Here is what I did:
mmseqs databases UniProtKB db/un…
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Hi,
I was wondering how can I set up [PDB70](https://wwwuser.gwdg.de/~compbiol/data/hhsuite/databases/hhsuite_dbs/) using mmseqs like uniref30 or colabfoldDB as it's done by `setup_databases.sh` sc…
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Hello , i have launched an orthofinder analysis on ~150Go of transcriptomic data coming from sra NCBI database. It's now computing since almost 30 days . I just need some experience about someone alre…
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## Expected Behavior
running a hhblits search should complete when searching with a sequence on a custom database
## Current Behavior
hhblits returns a segmentation fault
## Steps to Reproduce…
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## Expected Behavior
I ran this script with mmseqs2 part shown below and had a prefilter died error. What should I do?
#!/bin/bash
\## specify allocation - we want normal since we don't want to use…
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Hello,
I have been trying to get the db_creation workflow to run and I am stuck at the step `cluster_compositional_validation`:
In the logfile (logs/cval_stderr.err) it reads:
```
Invalid databa…