-
@MartinWahnschaffeSymeda @MateStrysewskeSym @Chinedar
**Project: SURVEILLANCE OUTBREAK RESPONSE MANAGEMENT & ANALYSIS SYSTEM (SORMAS) GHANA IMPLEMENTATION
Date(s): 12.10.2018
Prepared by: DANIEL T…
-
> Can we use the WHO ISO3 codes? Might make mapping simpler especially if the map also uses ISO3
Sure, I think we might want to make a separate script or output for that, so that we provide…
-
## What dataset you need?
Confirmed/Fatal/Recovered data of Monkeypox 2022 on date for locations (ISO3, City etc.)
## How will you use the dataset for your analysis?
With SIR-F model as the same way …
-
The number of recovered cases is only 5 in total now. This is lower than expected because there were around 30,000 confirmed/suspected cases on 01Aug2022.
![image](https://user-images.githubuserconte…
-
Monitor nexstrain genomic data for B.1 clade (outbreak-associated) outliers.
https://nextstrain.org/monkeypox/hmpxv1
-
### Context
In internal discussions on how to implement #860 and through my prototype in [monkeypox/ingest](https://github.com/nextstrain/monkeypox/blob/78d5b0e65f80c1817e6175f77c4154d9972e57f9/inges…
-
Currently globaldothealth/list contains covid-19 ingestion scripts. With #2712, we'll no longer be catering to only one disease, so it makes sense to move ingestion scripts into separate repo, one for…
-
Case report form was released for Monkeypox from WHO following the 2022 outbreak. Discussion here about which fields to add/adjust in Global.health monkeypox schema
https://www.who.int/publications…
Mougk updated
2 years ago
-
I see that minimap2 accepts gunzip files:
```
./minimap2 -ax map-pb ref.fa pacbio.fq.gz > aln.sam
```
Wondered if there were any plans to support `zstd` compressed files?
```
./minimap2 …
-
As the form has evolved a little bit, should we add the definition for the new open fields in the ontology?
- Disease
- PathogenSpecies
- HostSpecies