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Request from Sue:
> Attached figure is something I use quite often in my talks and unfortunately is quite out of date. I was wondering if GO has these three stats (unknown, predicted, experimentall…
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Hello !
I'm trying to use the genbank to gff3 converter on this Genbank file:[ NC_008724](https://www.ncbi.nlm.nih.gov/nuccore/NC_008724.1/)
But I get a ` KeyError: 'locus_tag'`, some features doe…
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**SO term name and accession**
Please give the term name and accession. Example: rRNA_gene (SO:0001637)
SO:0001659 promoter_element : An element that can exist within the promoter region of a gen…
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Dear Sir,
My name is Yashpal Ramakrishnaiah, doing bioinformatic research in BioinformaticsLab led by Dr. Sonika Tyagi, Monash University, Melbourne, Australia. We are working on a web based tool c…
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Following discussions amongst RNAcentral members (and specifically with Michelle Scott and Ruth Seal), we'd like to propose deleting the children of 'C_D_box_snoRNA' and 'H_ACA_box_snoRNA' (in the ncR…
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https://dx.doi.org/10.1093/nar/gkv1025
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https://docs.google.com/spreadsheets/d/1X870i3NhO7xEhqhLXK4eravNd72x-O-xbrpmlT835nY/edit?usp=sharing
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Hi there!
I want to use Manatee to characterize the ncRNA profile in pigs. I have run several times the perl script changing parameters and I always obtain 0 counts for all the species included in …
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**Describe the bug**
`agat_convert_sp_gff2gtf.pl` removes URL escape characters in the 9th column. In my testing, it removed a URL escape character in the 9th column which encodes for semicolons, i.e…
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Hi Dr. Shao,
I'm generating the TT-seq analysis to see the influence of acute degradation of a TF on the transcription of mRNAs and eRNAs. I find your transcription unit annotation script - TU_filt…