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NBISweden
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AGAT
Another Gtf/Gff Analysis Toolkit
GNU General Public License v3.0
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Provide option for padding with agat_sp_manage_IDs.pl?
#508
dirkjanvw
opened
4 days ago
4
agat_sp_statistics.pl for outputing whole distribution results as csv format
#507
Jasminefyh
opened
3 weeks ago
1
EXCEPTION: Bio::Root::Exception
#506
bijendrabio
closed
1 month ago
2
agat_sp_add_start_and_stop.pl MSG: Each line of the file must be less than 65,536 characters. Line 28 is 85016 chars.
#505
Xueliang24
closed
1 month ago
1
agat_sp_flag_premature_stop_codons.pl mostly flags genes without premature stop codons
#504
JWDebler
opened
1 month ago
4
agat_convert_minimap2_bam2gff.pl handle Insertion and deletion
#503
tjwu
opened
1 month ago
0
Lines missing after using agat_convert_sp_gff2gtf.pl
#502
JC-therea
closed
1 month ago
6
AGAT extracted only very small set of CDS from the *.gff3 and assembly file. Is there any probelm with the pipeline?
#501
Vijithkumar2020
opened
1 month ago
9
Failed execution on Singularity
#500
jyw-atgithub
opened
1 month ago
0
AGAT installation - "make test " shows two failed tests.
#499
Vijithkumar2020
closed
1 month ago
5
Extraction of all transcripts from the AUGUSTUS output *.gff dat. Confused with the appropriate AGAT command.
#498
Vijithkumar2020
closed
1 month ago
2
use AGAT::AGAT
#497
antzellie
closed
1 month ago
7
fix #457 remove attribute in gene_id and transcript_id to keep only the first …
#496
Juke34
opened
1 month ago
0
500K Gene Models with Many Short Sequences: Valid AGAT Output or Command Error?
#495
Vijithkumar2020
opened
1 month ago
1
500K Gene Models with Many Short Sequences: Valid AGAT Output or Command Error?
#494
Vijithkumar2020
closed
1 month ago
1
Error with GFF input file when using agat_sp_add_introns.pl and agat_convert_sp_gxf2gxf.pl
#493
mspopecki
opened
2 months ago
1
The agat_sp_filter_feature_by_attribute_value.pl installed by conda is an old version
#492
dongdongdong0203
opened
2 months ago
1
Clean l1
#491
Juke34
closed
2 months ago
0
update doc
#490
Juke34
closed
2 months ago
0
Stat
#489
Juke34
closed
2 months ago
0
fix #484
#488
Juke34
closed
2 months ago
0
sort tag L2
#487
Juke34
closed
2 months ago
0
Support gezipped fasta/gtf/gff for agat_sp_extract_sequences.pl
#486
Tong-Chen
closed
2 months ago
1
perl 5.38 agat1.4 blankfile
#485
18700951101
opened
2 months ago
1
No gene name when conversion from gff3 to gtf
#484
desmodus1984
closed
2 months ago
1
Mfannot - big improvement in handling this conversion
#483
Juke34
closed
2 months ago
0
Mkdocs
#482
Juke34
closed
2 months ago
0
remove inflate option fix #477
#481
Juke34
closed
2 months ago
0
AGAT not working/not installed properly
#480
vaneet-lotay
closed
2 months ago
5
agat_sp_extract_sequences.pl Could not open index file but it exists
#479
hans-vg
opened
2 months ago
1
Some transcripts are missing agat_convert_sp_gxf2gxf.pl
#478
IrinaVKuznetsova
opened
3 months ago
1
agat_convert_genscan2gff: --inflate-off is not a parameter
#477
Leila011
closed
2 months ago
2
Fix #475 : Added an option to refer a folder of GFF files
#476
IvanUgrin
closed
2 months ago
2
agat_sp_merge_annotations.pl to accept a folder of gff files
#475
IvanUgrin
closed
3 months ago
0
agat_sp_extract_sequences.pl extract all CDS on gene level
#474
fuesseler
closed
2 months ago
2
Fix #471 - agat_sp_filter_feature_by_attribute_value.pl
#473
Juke34
closed
4 months ago
0
Intron feature missing in the gtf
#472
xyz0o
closed
4 months ago
6
Error Filtering Non-Protein Coding Entries Using agat_sp_filter_feature_by_attribute_value.pl with -t "!" Parameter
#471
a01508252
closed
4 months ago
0
fix #420. Now table 0 can be called (bioperl >= april 2024 must be pr…
#470
Juke34
closed
4 months ago
0
how to convert a annotation file of gtf format into gff3 format
#469
RezwanCAAS
closed
5 months ago
3
How to merge two genes with overlapping positions but no overlapping CDS?
#468
binzhengbin
opened
5 months ago
9
Unknown/additional features in GFF2GTF conversion
#467
sivasubramanics
closed
5 months ago
3
fix #401
#466
Juke34
closed
5 months ago
0
fix mispelling script name in doc. fix #456
#465
Juke34
closed
5 months ago
0
426
#464
Juke34
closed
5 months ago
0
458
#463
Juke34
closed
5 months ago
0
function
#462
fanhuan
closed
5 months ago
2
agat_sp_manage_functional_annotation.pl stuck at diamond results transfering
#461
Gequris
closed
5 months ago
0
Undefined subroutine &main::prepare_gffout called at agat_convert_sp_gxf2gxf.pl line 52.
#459
karthickbrlab
closed
2 months ago
2
rename agat_sp_fix_cds_frame.pl to agat_sp_fix_cds_phase.pl in documentation
#458
webbchen
closed
5 months ago
0
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