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I am trying to work with Ontogpt, been following the Quick Start guide to get started, but I am getting TypeError when running command line `ontogpt --help.`
(venv) PS C:\Users\goran\PycharmProject…
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I am trying to run ontogpt as a singularity image on HPC cluster. The image starts to run but since it needs to download the supporting ontologies like Gene Ontology (GO) & it seems to use my home fol…
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Hi, I tried to install Ontogpt on Azure machine learning studio, and the package was installed alright. But when I type 'ontogpt', the following error message occurred:
Traceback (most recent cal…
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Hi @caufieldjh
I am working on a diabetes project where I am using Ontogpt. I want to build and install a custom diabetes template, I am following a custom schema page in Documentary and was able …
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On a run of the `EvalCTDNER`:
```bash
Democratic Republic of the Congo; World Health Organization; hospitals; health centers; hemoglobin (Hb)
INFO:root:PARSING LINE: chemicals:
DEBUG:root: FIEL…
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Hi,
I am trying to build a docker image having installation of ontogpt in order to give it platform independence of running because as such I see it can not run on our HPC nodes or other Linux distri…
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Oh, the wonderful world of python package dependencies. This is the only thing I don't miss about java.
llm uses pydantic2. OntoGPT will use llm and oak. oak uses pydantic1 indirectly via
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I ran this pubmed-annotate function: `ontogpt -vvv pubmed-annotate -t ibd_literature "inflammatory bowel disease" --limit 2000` and ran into the following error: `IndexError: list index out of range`.…
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Attempting to retrieve embeddings raises an error from the API:
```
$ ontogpt embed "obstreperous muskrat"
Traceback (most recent call last):
File "/home/harry/ontogpt/.venv/bin/ontogpt", line 6…
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1. Openai has upgraded to 1.0+ thus raise many incompatibility issues. `openai migrate` can help, but there are still some lines I need to modify by myself.
2. `pip install ontogpt` will install Pyd…