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monarch-initiative
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ontogpt
LLM-based ontological extraction tools, including SPIRES
https://monarch-initiative.github.io/ontogpt/
BSD 3-Clause "New" or "Revised" License
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Fix issue with early termination of multilanguage analysis runs
#408
caufieldjh
closed
1 hour ago
0
Fewer results than expected when running ontogpt run_multilingual_analysis
#407
justaddcoffee
closed
1 hour ago
5
Additional updates to the Alzheimers extraction template
#406
caufieldjh
closed
5 hours ago
0
Restructure Alz extraction template; split into two variants
#405
caufieldjh
closed
6 days ago
0
HugginFace API + UnboundLocalError: local variable 'results' referenced before assignment
#404
SimoneAstarita
opened
6 days ago
1
Further updates to the ADRD extraction template
#403
caufieldjh
closed
6 days ago
0
Remove redundant calls to normalize cached objects
#402
caufieldjh
opened
1 week ago
0
Enable omitting or truncating input text in output
#401
caufieldjh
opened
2 weeks ago
0
Add template for summarizing LinkML data validation reports
#400
caufieldjh
closed
2 weeks ago
0
Improvements for the alzrd template
#399
caufieldjh
closed
2 weeks ago
1
Bump version to 0.3.15
#398
caufieldjh
closed
3 weeks ago
0
Fixes #396
#397
cmungall
closed
3 weeks ago
1
pubmed-extract no longer works?
#396
cmungall
closed
3 weeks ago
0
Adding STORMS checklist
#395
cmungall
closed
3 weeks ago
1
Fixing failure to parse markdown, JSON formatting, and numbered lists
#394
caufieldjh
closed
3 weeks ago
3
Add ontology usage extraction template
#393
caufieldjh
closed
4 weeks ago
0
Template for Alzheimer's Disease extractions from literature; expose the `max-text-length` option for pubmed_annotate
#392
caufieldjh
closed
1 month ago
0
Failure to parse markdown formatting leads to errors
#391
caufieldjh
closed
3 weeks ago
1
Add template for alternate gene symbol extraction strategy
#390
caufieldjh
closed
1 month ago
0
Updates for docs
#389
caufieldjh
closed
1 month ago
0
Add custom template loader
#388
caufieldjh
closed
1 month ago
0
ERROR: Could not build wheels for adeft, which is required to install pyproject.toml-based projects
#387
konashevich
opened
1 month ago
2
Add notebook with two quick CLI and webapp examples
#386
caufieldjh
closed
1 month ago
0
More webapp updates - more models and all templates
#385
caufieldjh
closed
1 month ago
0
Make it easier to use custom schemas
#384
vemonet
closed
1 month ago
3
UnboundLocalError: local variable 'normalized_id' referenced before assignment
#383
caufieldjh
closed
1 month ago
1
Include only input-relevant named entities when producing output
#382
caufieldjh
closed
1 month ago
0
Prep for 0.3.12
#381
caufieldjh
closed
1 month ago
0
Update options for embedding models
#380
caufieldjh
closed
1 month ago
0
Update options for embedding models
#379
caufieldjh
closed
1 month ago
0
Add support for gpt-4o
#378
caufieldjh
closed
1 month ago
0
More fixes for the webapp
#377
caufieldjh
closed
1 month ago
0
gpt-4o
#376
rkboyce
closed
1 month ago
3
Updates for the webapp
#375
caufieldjh
closed
1 month ago
0
Running web-ontogpt yeilds an "Internal Server Error"
#374
ddooley
closed
1 month ago
15
Add support for more models
#373
caufieldjh
opened
1 month ago
1
Ground multilingual to MONDO only
#372
caufieldjh
closed
1 month ago
3
OpenAI base URL
#371
syaikhipin
opened
1 month ago
1
Transient errors with Translator endpoint
#370
caufieldjh
opened
1 month ago
1
Multilanguage gpt
#369
cmungall
closed
1 month ago
12
Make missing API key errors more friendly
#368
caufieldjh
opened
2 months ago
0
Broken links in documentation
#367
caufieldjh
opened
2 months ago
0
Update default model for OpenAI to gpt-4-turbo
#366
caufieldjh
closed
2 months ago
0
Add template suggestion command
#365
caufieldjh
closed
2 months ago
0
Update default model for OpenAI
#364
caufieldjh
closed
2 months ago
1
Add caching for mapper
#363
caufieldjh
opened
2 months ago
0
Add extraction template for MIRO checklist
#362
caufieldjh
opened
3 months ago
0
Add grounding refiner option for SPIRES
#361
caufieldjh
opened
3 months ago
0
Fixes for #355 - more parsing for KGX output
#360
caufieldjh
closed
3 months ago
1
Make azure_settings import conditional on using the azure_select flag
#359
caufieldjh
closed
3 months ago
0
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