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Hi,
(thanks for a great application)
Toxic model averaging works fine, as far as I can judge, but I never get any GO/reactome/bioplanet results for Danio rerio although mouse and fruitfly works fine…
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I was trying to find a way to retrieve the orthologs for a single input gene (no constraint on the target organisms).
Input gene: RGD:3889
Input taxon: 10116
Started loading, then timeout. Appa…
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From @ValWood
Scenario: user has created a model and not added any evidence, or evidence is incomplete. Example: a cloned model from another species with orthologs switched or a quickly knocked toget…
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Hello,
I am getting an error shown below with the test dataset provided by Metalaffa. I tried increasing the latency period to 180 seconds and still I face the same error:-
`
Running MUSiCC...
…
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Hey @igordot , hope all is well with you!
My colleagues and I noticed something odd in the *Canis lupus familiaris* orthologs in `orthogene`, and I traced it back to `babelgene`. See here for the f…
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Hi, I am facing the below mention issue. I have tried to go through the module assess_specific_genes.nf and unable to resolve this on my own and would request your help. I am trying this with the test…
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## **Problem:**
When using CompGenObjects, the initial runtime for a full file can take up to 5 minutes.
## **Solution:**
In order to speed this up, it would be good to add the entire csv file …
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HGNC has additional orthologies compared to EntrezGene. Need to add these into the orthology dataset to load.
Natalie is reviewing MGI/RGD in case there are additional ortholog relations not capture…
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**UniProt UniRule (ID and label):**
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
IEA with UR000107549 GO_REF:0000104 43
GO:0000463 mat…
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The log-likelihoods for identical trees vary. This leads to rejection of one tree, while another is kept (I only checked the AU-test). A different extreme - identical trees have very similar likelihoo…